GR312955

Overview
NameGR312955
Unique NameGR312955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:961..1413. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RACG_DICDI (Rho-related protein racG OS=Dictyostelium discoideum GN=racG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.579e-12
Identity = 39/123 (31.71%), Postives = 62/123 (50.41%), Query Frame = 1
Query:   46 SFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQV 411
            S K+ +VG GG GKT+ +  + +     +Y+PT+      L    N        WDTAGQE+F  LR   Y      ++ F +    ++ N+  +W ++L   C N PIVL G ++D+K+  V
Sbjct:    3 SIKVCVVGEGGIGKTSMLLSYTSNSISNEYQPTVFDNYSTL-LMHNKKPYNLSLWDTAGQEEFSKLRRLSYPQTDVFLLCFSLINPSSFSNILDSWVQELNENCPNTPIVLVGTQMDLKSNSV 124          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RACA_DICDI (Rho-related protein racA OS=Dictyostelium discoideum GN=racA PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 8.579e-12
Identity = 41/137 (29.93%), Postives = 70/137 (51.09%), Query Frame = 1
Query:   46 SFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK-NRQVKAKQVTFHRKKNL 450
            + KLV+VG+G  GK+  +  + T  F  +Y PT+  + +  +   +        WDTAGQE +  LR   Y      +I F + +R +++N+   W+ ++     NIPIVL G K D++ +  +K  +V+     NL
Sbjct:    3 AIKLVVVGDGAVGKSCLLIAYTTNAFPGEYVPTV-FDNYSANVMIDGKPFNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSRASFENIRAKWYPEILHHAPNIPIVLVGTKNDLRGHHDLKRPEVSAAEANNL 138          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RABL_MIMIV (Probable Rab-related GTPase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R214 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.579e-12
Identity = 37/126 (29.37%), Postives = 65/126 (51.59%), Query Frame = 1
Query:   25 QQTVDYPSFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDV 396
            ++ ++   +K++++G+ G GK++ V + L         PTIG            GK ++   WDTAGQE+F  +   YY +    +++FDVT R ++ +V  W  DL   C     I++  NK+D+
Sbjct:    6 KEKMENNGYKIILIGSSGVGKSSIVHQFLFNRKISNVSPTIGAAFASKQVIAKNGKTLKLNIWDTAGQERFRSITKMYYTNSLGCLVVFDVTDRESFDDVYYWINDLRINCHTTYYILVVANKIDI 131          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RABG2_DICDI (Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 8.579e-12
Identity = 35/122 (28.69%), Postives = 63/122 (51.64%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQV 411
            FK++++G+   GKT+ + R     F++       V+    +   +        WDTAGQE+F  +   +Y      ++ +DVT +LTY NV  W +++ R     +  VL GNK D+++R++
Sbjct:    7 FKILLIGDSAVGKTSLLLRFADNSFQETSVNMTSVDYKNKNIVIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVRLWMQEIQRYAVLGVSRVLVGNKCDLEDRKL 128          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB31_HUMAN (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.579e-12
Identity = 44/130 (33.85%), Postives = 69/130 (53.08%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN---CGKI--RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAK 420
            K+ ++G+ G GK++ V R +   F+    PTIG       F T    CG    +F  WDTAGQE+F  L   YY     A+I++D+T + ++  +  W ++L     ENI + + GNK D+ + R+V  K
Sbjct:    7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGAS-----FMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLK 131          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHOF_HUMAN (Rho-related GTP-binding protein RhoF OS=Homo sapiens GN=RHOF PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.121e-11
Identity = 42/131 (32.06%), Postives = 68/131 (51.91%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQV 426
            K+VIVG+GG GKT+ +  +  G F + Y P++  E +         ++    +DTAGQE +  LR   Y +    +I +DV    +Y NV   W  ++   C  IP+VL G K D++      R+++A Q+
Sbjct:   21 KIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSV-FEKYTASVTVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHFCRGIPMVLIGCKTDLRKDKEQLRKLRAAQL 150          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHOF_BOVIN (Rho-related GTP-binding protein RhoF OS=Bos taurus GN=RHOF PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.121e-11
Identity = 42/131 (32.06%), Postives = 68/131 (51.91%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQV 426
            K+VIVG+GG GKT+ +  +  G F + Y P++  E +         ++    +DTAGQE +  LR   Y +    +I +DV    +Y NV   W  ++   C  IP+VL G K D++      R+++A Q+
Sbjct:   25 KIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSV-FEKYTASVTVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHFCRGIPMVLIGCKTDLRKDKEQLRKLRAAQL 154          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RB22A_HUMAN (Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.121e-11
Identity = 38/116 (32.76%), Postives = 59/116 (50.86%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDV 396
            K+ ++G+ G GK++ V R +   F+    PTIG               +F  WDTAGQE+F  L   YY     AII++D+T   T+  +  W ++L +    NI + + GNK D+
Sbjct:    7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDL 122          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RASM_MOUSE (Ras-related protein M-Ras OS=Mus musculus GN=Mras PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.121e-11
Identity = 44/130 (33.85%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   13 ALPSQQTVDYPSFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDV 396
            A+PS+   + P++KLV+VG+GG GK+    +     F   Y+PTI           N   I     DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV   E+ P++L  NKVD+
Sbjct:    5 AVPSE---NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 130          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RASM_HUMAN (Ras-related protein M-Ras OS=Homo sapiens GN=MRAS PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.121e-11
Identity = 45/141 (31.91%), Postives = 77/141 (54.61%), Query Frame = 1
Query:   10 MALPSQQTVDYPSFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ 423
            MA  +  + + P++KLV+VG+GG GK+    +     F   Y+PTI           N   I     DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV   E+ P++L  NKVD+ + R++  +Q
Sbjct:    1 MATSAVPSDNLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKITREQ 140          
The following BLAST results are available for this feature:
BLAST of GR312955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RACG_DICDI8.579e-1231.71Rho-related protein racG OS=Dictyostelium discoide... [more]
RACA_DICDI8.579e-1229.93Rho-related protein racA OS=Dictyostelium discoide... [more]
RABL_MIMIV8.579e-1229.37Probable Rab-related GTPase OS=Acanthamoeba polyph... [more]
RABG2_DICDI8.579e-1228.69Ras-related protein RabG2 OS=Dictyostelium discoid... [more]
RAB31_HUMAN8.579e-1233.85Ras-related protein Rab-31 OS=Homo sapiens GN=RAB3... [more]
RHOF_HUMAN1.121e-1132.06Rho-related GTP-binding protein RhoF OS=Homo sapie... [more]
RHOF_BOVIN1.121e-1132.06Rho-related GTP-binding protein RhoF OS=Bos taurus... [more]
RB22A_HUMAN1.121e-1132.76Ras-related protein Rab-22A OS=Homo sapiens GN=RAB... [more]
RASM_MOUSE1.121e-1133.85Ras-related protein M-Ras OS=Mus musculus GN=Mras ... [more]
RASM_HUMAN1.121e-1131.91Ras-related protein M-Ras OS=Homo sapiens GN=MRAS ... [more]

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Properties
Property NameValue
Genbank descriptionC06054B03 RindPdigS Citrus sinensis cDNA clone N08A02, mRNA sequence.