GR312955

Overview
NameGR312955
Unique NameGR312955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:961..1413. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RASD_DICDI (Ras-like protein rasD OS=Dictyostelium discoideum GN=rasD PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.121e-11
Identity = 40/128 (31.25%), Postives = 69/128 (53.91%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ 423
            +KLVIVG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   GQ  + ++ +T+R +Y  + ++   + RV   + +P++L GNK D+ + RQV   +
Sbjct:    4 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIE-DSYRKQVSIDDETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSYDEIASFREQILRVKDKDRVPLILVGNKADLDHERQVSVNE 130          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAS2_RHIRA (Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.121e-11
Identity = 39/125 (31.20%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFF-TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDV-KNRQV 411
            +K+V+VG+GG GK+    + +   F  +Y+PTI           + C  +     DTAGQE++  +R+ +  +G+  ++++ +T+  T++ V   H  + RV   E+ P+VL GNK D+ ++RQV
Sbjct:   12 YKIVMVGDGGVGKSAMTIQFIQSTFVDEYDPTIEDSYRKQCLIDSECAMLDIL--DTAGQEEYSAMRERFMRNGEGFVLIYSITSYHTFEQVQKLHEQIARVKDLEHFPMVLVGNKCDLEQDRQV 134          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAS2_DROME (Ras-like protein 2 OS=Drosophila melanogaster GN=Ras64B PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.121e-11
Identity = 41/142 (28.87%), Postives = 74/142 (52.11%), Query Frame = 1
Query:   46 SFKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI-----RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 450
            ++KLV+VG GG GK+    + +   F   Y+PTI       D +T    I     +    DTAGQE+F  +R+ Y   G+  +++F +    ++  +P + R + RV   +  P+++ GNK D+K++Q  + +   +  +NL
Sbjct:    5 TYKLVVVGGGGVGKSAITIQFIQSYFVTDYDPTIE------DSYTKQCNIDDVPAKLDILDTAGQEEFSAMREQYMRSGEGFLLVFALNDHSSFDEIPKFQRQILRVKDRDEFPMLMVGNKCDLKHQQQVSLEEAQNTSRNL 140          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RALA_SAGOE (Ras-related protein Ral-A OS=Saguinus oedipus GN=RALA PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.121e-11
Identity = 39/134 (29.10%), Postives = 72/134 (53.73%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN 447
            K+++VG+GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D++++    +QV+    KN
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK----RQVSVEEAKN 144          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RALA_RAT (Ras-related protein Ral-A OS=Rattus norvegicus GN=Rala PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.121e-11
Identity = 39/134 (29.10%), Postives = 72/134 (53.73%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN 447
            K+++VG+GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D++++    +QV+    KN
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK----RQVSVEEAKN 144          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RALA_MOUSE (Ras-related protein Ral-A OS=Mus musculus GN=Rala PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.121e-11
Identity = 39/134 (29.10%), Postives = 72/134 (53.73%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN 447
            K+++VG+GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D++++    +QV+    KN
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK----RQVSVEEAKN 144          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RALA_HUMAN (Ras-related protein Ral-A OS=Homo sapiens GN=RALA PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.121e-11
Identity = 39/134 (29.10%), Postives = 72/134 (53.73%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN 447
            K+++VG+GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D++++    +QV+    KN
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK----RQVSVEEAKN 144          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB41_HUMAN (Ras-related protein Rab-41 OS=Homo sapiens GN=RAB41 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.121e-11
Identity = 40/141 (28.37%), Postives = 71/141 (50.35%), Query Frame = 1
Query:   16 LPSQQTVDYPSF---KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQ 423
            L + +  +Y S    KL+ +G    GKT+ + R +   F    + T+G++      +     ++   WDTAGQE+F  L   Y      A++++D+T   ++K    W   +     +++ I+L GNK+D+ N RQV A+Q
Sbjct:   18 LEAAERTEYQSLCKSKLLFLGEQSVGKTSIISRFMYNSFGCACQATVGIDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRAERGDDVVIMLLGNKIDLDNKRQVTAEQ 158          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHOC_PONAB (Rho-related GTP-binding protein RhoC OS=Pongo abelii GN=RHOC PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.463e-11
Identity = 39/117 (33.33%), Postives = 62/117 (52.99%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVK 399
            KLVIVG+G  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHOC_MOUSE (Rho-related GTP-binding protein RhoC OS=Mus musculus GN=Rhoc PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.463e-11
Identity = 39/117 (33.33%), Postives = 62/117 (52.99%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVK 399
            KLVIVG+G  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122          
The following BLAST results are available for this feature:
BLAST of GR312955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASD_DICDI1.121e-1131.25Ras-like protein rasD OS=Dictyostelium discoideum ... [more]
RAS2_RHIRA1.121e-1131.20Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2... [more]
RAS2_DROME1.121e-1128.87Ras-like protein 2 OS=Drosophila melanogaster GN=R... [more]
RALA_SAGOE1.121e-1129.10Ras-related protein Ral-A OS=Saguinus oedipus GN=R... [more]
RALA_RAT1.121e-1129.10Ras-related protein Ral-A OS=Rattus norvegicus GN=... [more]
RALA_MOUSE1.121e-1129.10Ras-related protein Ral-A OS=Mus musculus GN=Rala ... [more]
RALA_HUMAN1.121e-1129.10Ras-related protein Ral-A OS=Homo sapiens GN=RALA ... [more]
RAB41_HUMAN1.121e-1128.37Ras-related protein Rab-41 OS=Homo sapiens GN=RAB4... [more]
RHOC_PONAB1.463e-1133.33Rho-related GTP-binding protein RhoC OS=Pongo abel... [more]
RHOC_MOUSE1.463e-1133.33Rho-related GTP-binding protein RhoC OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionC06054B03 RindPdigS Citrus sinensis cDNA clone N08A02, mRNA sequence.