GR312955

Overview
NameGR312955
Unique NameGR312955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:961..1413. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAS1_DROWI (Ras-like protein 1 OS=Drosophila willistoni GN=Ras85D PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.911e-11
Identity = 39/127 (30.71%), Postives = 70/127 (55.12%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQ 423
            +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   G+  +++F V +  +++++ T+   + RV   E +P+VL GNK D+ +  V+ +Q
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLPSWNVQNEQ 129          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAS1_DROVI (Ras-like protein 1 OS=Drosophila virilis GN=Ras85D PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.911e-11
Identity = 39/127 (30.71%), Postives = 70/127 (55.12%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQ 423
            +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   G+  +++F V +  +++++ T+   + RV   E +P+VL GNK D+ +  V+ +Q
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLASWNVQNEQ 129          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAS1_DROGR (Ras-like protein 1 OS=Drosophila grimshawi GN=Ras85D PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.911e-11
Identity = 39/127 (30.71%), Postives = 70/127 (55.12%), Query Frame = 1
Query:   49 FKLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQ 423
            +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   G+  +++F V +  +++++ T+   + RV   E +P+VL GNK D+ +  V+ +Q
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLPSWNVQNEQ 129          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.911e-11
Identity = 34/121 (28.10%), Postives = 64/121 (52.89%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQV 411
            KL+++G+ G GK+  + R   G F   +  TIG++           +I+   WDTAGQE+F  +   YY      ++++DVT   ++ ++  W R++     +++  +L GNK D+  ++V
Sbjct:   17 KLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKV 137          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.911e-11
Identity = 35/120 (29.17%), Postives = 64/120 (53.33%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ 408
            K++++G+ G GK+  + R     F   Y  TIGV+        +  KI+   WDTAGQE+F  +   YY      II++D+T+  ++ ++  W  D+ R    ++  ++ GNK D+ +++
Sbjct:   35 KILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKR 154          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHOF_MOUSE (Rho-related GTP-binding protein RhoF OS=Mus musculus GN=Rhof PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.496e-11
Identity = 42/131 (32.06%), Postives = 67/131 (51.15%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQV 426
            K+VIVG+GG GKT+ +  +  G F + Y P++  E +         ++    +DTAGQE +  LR   Y +    +I +DV    +Y NV   W  ++   C  IP VL G K D++      R+++A Q+
Sbjct:   21 KIVIVGDGGCGKTSLLMVYCQGSFPEHYAPSV-FEKYTASVTVGNKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHFCRGIPTVLIGCKTDLRKDKEQLRKLRAAQL 150          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHOB_RAT (Rho-related GTP-binding protein RhoB OS=Rattus norvegicus GN=Rhob PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.496e-11
Identity = 39/118 (33.05%), Postives = 62/118 (52.54%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN 402
            KLV+VG+G  GKT  +      EF + Y PT+  E +  D   +  ++    WDTAGQE +  LR   Y      ++ F V +  + +N+P  W  ++   C N+PI+L  NK D+++
Sbjct:    7 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 123          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHOB_MOUSE (Rho-related GTP-binding protein RhoB OS=Mus musculus GN=Rhob PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.496e-11
Identity = 39/118 (33.05%), Postives = 62/118 (52.54%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN 402
            KLV+VG+G  GKT  +      EF + Y PT+  E +  D   +  ++    WDTAGQE +  LR   Y      ++ F V +  + +N+P  W  ++   C N+PI+L  NK D+++
Sbjct:    7 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 123          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHOB_HUMAN (Rho-related GTP-binding protein RhoB OS=Homo sapiens GN=RHOB PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.496e-11
Identity = 39/118 (33.05%), Postives = 62/118 (52.54%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN 402
            KLV+VG+G  GKT  +      EF + Y PT+  E +  D   +  ++    WDTAGQE +  LR   Y      ++ F V +  + +N+P  W  ++   C N+PI+L  NK D+++
Sbjct:    7 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 123          
BLAST of GR312955 vs. ExPASy Swiss-Prot
Match: RHOB_BOVIN (Rho-related GTP-binding protein RhoB OS=Bos taurus GN=RHOB PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.496e-11
Identity = 39/118 (33.05%), Postives = 62/118 (52.54%), Query Frame = 1
Query:   52 KLVIVGNGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN 402
            KLV+VG+G  GKT  +      EF + Y PT+  E +  D   +  ++    WDTAGQE +  LR   Y      ++ F V +  + +N+P  W  ++   C N+PI+L  NK D+++
Sbjct:    7 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 123          
The following BLAST results are available for this feature:
BLAST of GR312955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS1_DROWI1.911e-1130.71Ras-like protein 1 OS=Drosophila willistoni GN=Ras... [more]
RAS1_DROVI1.911e-1130.71Ras-like protein 1 OS=Drosophila virilis GN=Ras85D... [more]
RAS1_DROGR1.911e-1130.71Ras-like protein 1 OS=Drosophila grimshawi GN=Ras8... [more]
RAB8B_DICDI1.911e-1128.10Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB1C_DICDI1.911e-1129.17Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RHOF_MOUSE2.496e-1132.06Rho-related GTP-binding protein RhoF OS=Mus muscul... [more]
RHOB_RAT2.496e-1133.05Rho-related GTP-binding protein RhoB OS=Rattus nor... [more]
RHOB_MOUSE2.496e-1133.05Rho-related GTP-binding protein RhoB OS=Mus muscul... [more]
RHOB_HUMAN2.496e-1133.05Rho-related GTP-binding protein RhoB OS=Homo sapie... [more]
RHOB_BOVIN2.496e-1133.05Rho-related GTP-binding protein RhoB OS=Bos taurus... [more]

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Properties
Property NameValue
Genbank descriptionC06054B03 RindPdigS Citrus sinensis cDNA clone N08A02, mRNA sequence.