GO242474

Overview
NameGO242474
Unique NameGO242474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242474 vs. ExPASy Swiss-Prot
Match: KNOS2_ORYSJ (Homeobox protein knotted-1-like 2 OS=Oryza sativa subsp. japonica GN=HOS58 PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 7.137e-48
Identity = 90/116 (77.59%), Postives = 102/116 (87.93%), Query Frame = 1
Query:    1 GPLLPTETERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 348
            GPL+ TE ERSL+ERVR ELK ELKQG+K ++ D+REEILRKRRAGKLPGDT S+LK WWQ HSKWPYPTEDDKA+LV+ETGLQLKQINNWFINQRKRNWHSN  S +  K+K+KR
Sbjct:  187 GPLMLTEGERSLVERVRHELKNELKQGYKEKLVDIREEILRKRRAGKLPGDTASILKAWWQAHSKWPYPTEDDKARLVQETGLQLKQINNWFINQRKRNWHSNPAS-SGEKTKKKR 301          
BLAST of GO242474 vs. ExPASy Swiss-Prot
Match: KNOX1_MAIZE (Homeobox protein knotted-1-like 1 (Fragment) OS=Zea mays GN=KNOX1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.943e-45
Identity = 83/88 (94.32%), Postives = 87/88 (98.86%), Query Frame = 1
Query:   46 VRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSN 309
            VRQELK+ELKQGFKSRIEDVREEILRKRRAGKLPGDTTS+LK WWQ+HSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH+N
Sbjct:    1 VRQELKLELKQGFKSRIEDVREEILRKRRAGKLPGDTTSILKQWWQEHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNN 88          
BLAST of GO242474 vs. ExPASy Swiss-Prot
Match: KNOX2_MAIZE (Homeobox protein knotted-1-like 2 (Fragment) OS=Zea mays GN=KNOX2 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.594e-39
Identity = 72/88 (81.82%), Postives = 81/88 (92.05%), Query Frame = 1
Query:   46 VRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSN 309
            VRQELK ELKQG++ ++ D+REEILRKRRAGKLPGDT S LK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWH+N
Sbjct:    1 VRQELKHELKQGYRDKLVDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHNN 88          
BLAST of GO242474 vs. ExPASy Swiss-Prot
Match: KNOX7_MAIZE (Homeobox protein knotted-1-like 7 (Fragment) OS=Zea mays GN=KNOX7 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.718e-39
Identity = 72/85 (84.71%), Postives = 79/85 (92.94%), Query Frame = 1
Query:   55 ELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSN 309
            ELK ELKQG+K ++ D+REEI+RKRRAGKLPGDT SVLK WWQ HSKWPYPTEDDKA+LV+ETGLQLKQINNWFINQRKRNWHSN
Sbjct:    1 ELKNELKQGYKEKLVDIREEIMRKRRAGKLPGDTASVLKAWWQAHSKWPYPTEDDKARLVQETGLQLKQINNWFINQRKRNWHSN 85          
BLAST of GO242474 vs. ExPASy Swiss-Prot
Match: KNOX6_MAIZE (Homeobox protein knotted-1-like 6 (Fragment) OS=Zea mays GN=KNOX6 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.718e-39
Identity = 72/85 (84.71%), Postives = 79/85 (92.94%), Query Frame = 1
Query:   55 ELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSN 309
            ELK ELKQG+K ++ D+REEI+RKRRAGKLPGDT SVLK WWQ HSKWPYPTEDDKA+LV+ETGLQLKQINNWFINQRKRNWHSN
Sbjct:    1 ELKNELKQGYKEKLVDIREEIMRKRRAGKLPGDTASVLKAWWQAHSKWPYPTEDDKARLVQETGLQLKQINNWFINQRKRNWHSN 85          
BLAST of GO242474 vs. ExPASy Swiss-Prot
Match: KNOS6_ORYSJ (Homeobox protein knotted-1-like 6 OS=Oryza sativa subsp. japonica GN=OSH1 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.019e-22
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   46 VRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQ 315
            V QELK  L + +   +  +++E+ +K++ GKLP D    L NWW+ H KWPYP+E  K  L E TGL LKQINNWFINQRKR+W  + +
Sbjct:  239 VDQELKHHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQQLLNWWELHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSDE 328          
BLAST of GO242474 vs. ExPASy Swiss-Prot
Match: KNAT2_ARATH (Homeobox protein knotted-1-like 2 OS=Arabidopsis thaliana GN=KNAT2 PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 8.785e-22
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   52 QELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 300
            ++LK +L + F S I  ++ E  +K++ GKLP +    L +WW  H+KWPYPTE DK  L EETGL  KQINNWFINQRKR+W
Sbjct:  207 RDLKDQLLRKFGSHISSLKLEFSKKKKKGKLPREARQALLDWWNVHNKWPYPTEGDKISLAEETGLDQKQINNWFINQRKRHW 289          
BLAST of GO242474 vs. ExPASy Swiss-Prot
Match: KNX11_MAIZE (Homeobox protein knotted-1-like 11 (Fragment) OS=Zea mays GN=KNOX11 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.147e-21
Identity = 45/83 (54.22%), Postives = 57/83 (68.67%), Query Frame = 1
Query:   52 QELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 300
            +ELK  L + +   +  +R E L+KR+ GKLP D  S L +WW  H +WPYPTE+DK +L   TGL  KQINNWFINQRKR+W
Sbjct:    3 RELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKVRLAAATGLDPKQINNWFINQRKRHW 85          
BLAST of GO242474 vs. ExPASy Swiss-Prot
Match: KN1_MAIZE (Homeotic protein knotted-1 OS=Zea mays GN=KN-1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.147e-21
Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   46 VRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQ 315
            V QELK  L + +   +  +++E+ +K++ GKLP +    L +WW QH KWPYP+E  K  L E TGL LKQINNWFINQRKR+W  + +
Sbjct:  239 VDQELKHHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQQLLSWWDQHYKWPYPSETQKVALAESTGLDLKQINNWFINQRKRHWKPSEE 328          
BLAST of GO242474 vs. ExPASy Swiss-Prot
Match: KNOX5_MAIZE (Homeobox protein knotted-1-like 5 (Fragment) OS=Zea mays GN=KNOX5 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.957e-21
Identity = 45/82 (54.88%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   55 ELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 300
            ELK  L + +   +  +R E L+KR+ GKLP D  S L +WW  H +WPYPTE+DK +L   TGL  KQINNWFINQRKR+W
Sbjct:    1 ELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRHW 82          
The following BLAST results are available for this feature:
BLAST of GO242474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
KNOS2_ORYSJ7.137e-4877.59Homeobox protein knotted-1-like 2 OS=Oryza sativa ... [more]
KNOX1_MAIZE1.943e-4594.32Homeobox protein knotted-1-like 1 (Fragment) OS=Ze... [more]
KNOX2_MAIZE1.594e-3981.82Homeobox protein knotted-1-like 2 (Fragment) OS=Ze... [more]
KNOX7_MAIZE2.718e-3984.71Homeobox protein knotted-1-like 7 (Fragment) OS=Ze... [more]
KNOX6_MAIZE2.718e-3984.71Homeobox protein knotted-1-like 6 (Fragment) OS=Ze... [more]
KNOS6_ORYSJ3.019e-2250.00Homeobox protein knotted-1-like 6 OS=Oryza sativa ... [more]
KNAT2_ARATH8.785e-2254.22Homeobox protein knotted-1-like 2 OS=Arabidopsis t... [more]
KNX11_MAIZE1.147e-2154.22Homeobox protein knotted-1-like 11 (Fragment) OS=Z... [more]
KN1_MAIZE1.147e-2148.89Homeotic protein knotted-1 OS=Zea mays GN=KN-1 PE=... [more]
KNOX5_MAIZE1.957e-2154.88Homeobox protein knotted-1-like 5 (Fragment) OS=Ze... [more]

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Properties
Property NameValue
Genbank description1122 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1288 5, mRNA sequence.