GO242446

Overview
NameGO242446
Unique NameGO242446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242446 vs. ExPASy Swiss-Prot
Match: PALY_MEDSA (Phenylalanine ammonia-lyase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.050e-16
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 LGARYLTGEKAISPGEECDKVFTAICQGKIIDPLLECLKEWDGSPLPI 145
            LG   LTGE  ISPGEECDK+F+A+CQGKIIDPLLECL EW+G+PLPI
Sbjct:  677 LGTGLLTGENVISPGEECDKLFSAMCQGKIIDPLLECLGEWNGAPLPI 724          
BLAST of GO242446 vs. ExPASy Swiss-Prot
Match: PALY_MALDO (Phenylalanine ammonia-lyase (Fragment) OS=Malus domestica GN=PAL PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.678e-16
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 LGARYLTGEKAISPGEECDKVFTAICQGKIIDPLLECLKEWDGSPLPI 145
            LG  YLTGEK  SPGEECDKVF AICQGKIIDP+L CL+ W+G+PLPI
Sbjct:  187 LGGEYLTGEKVRSPGEECDKVFQAICQGKIIDPILGCLEGWNGAPLPI 234          
BLAST of GO242446 vs. ExPASy Swiss-Prot
Match: PAL2_ARATH (Phenylalanine ammonia-lyase 2 OS=Arabidopsis thaliana GN=PAL2 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.678e-16
Identity = 34/48 (70.83%), Postives = 44/48 (91.67%), Query Frame = 2
Query:    2 LGARYLTGEKAISPGEECDKVFTAICQGKIIDPLLECLKEWDGSPLPI 145
            LG + LTGEK +SPGEE DKVFTA+C+GK+IDPL++CLKEW+G+P+PI
Sbjct:  669 LGTKLLTGEKVVSPGEEFDKVFTAMCEGKLIDPLMDCLKEWNGAPIPI 716          
BLAST of GO242446 vs. ExPASy Swiss-Prot
Match: PAL1_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.497e-16
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 LGARYLTGEKAISPGEECDKVFTAICQGKIIDPLLECLKEWDGSPLPI 145
            LG   LTGEK  SPGEECDKVFTA+C G+IIDP+LECLK W+G+PLPI
Sbjct:  667 LGTELLTGEKVRSPGEECDKVFTAMCNGQIIDPMLECLKSWNGAPLPI 714          
BLAST of GO242446 vs. ExPASy Swiss-Prot
Match: PAL2_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.567e-16
Identity = 37/48 (77.08%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 LGARYLTGEKAISPGEECDKVFTAICQGKIIDPLLECLKEWDGSPLPI 145
            LG   LTGEK  SPGE CDKVFTA+C G IIDPLLECLK WDG+PLPI
Sbjct:  660 LGTEMLTGEKVKSPGEVCDKVFTAVCDGGIIDPLLECLKSWDGAPLPI 707          
BLAST of GO242446 vs. ExPASy Swiss-Prot
Match: PALY_POPTR (Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.017e-15
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 LGARYLTGEKAISPGEECDKVFTAICQGKIIDPLLECLKEWDGSPLPI 145
            LG   LTGEK  SPGEE DKVFTA+CQGKIIDP+LECL EW+GSPLPI
Sbjct:  667 LGTVLLTGEKVQSPGEEFDKVFTAMCQGKIIDPMLECLGEWNGSPLPI 714          
BLAST of GO242446 vs. ExPASy Swiss-Prot
Match: PALY_BROFI (Phenylalanine ammonia-lyase OS=Bromheadia finlaysoniana GN=PAL PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.017e-15
Identity = 34/48 (70.83%), Postives = 43/48 (89.58%), Query Frame = 2
Query:    2 LGARYLTGEKAISPGEECDKVFTAICQGKIIDPLLECLKEWDGSPLPI 145
            +G+ +LTGEK +SPGEE DKVF AIC+GK IDP+L+CLKEW+G+PLPI
Sbjct:  655 VGSGFLTGEKVVSPGEEFDKVFNAICEGKAIDPMLDCLKEWNGAPLPI 702          
BLAST of GO242446 vs. ExPASy Swiss-Prot
Match: PAL1_PHAVU (Phenylalanine ammonia-lyase class 1 (Fragment) OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.017e-15
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 LGARYLTGEKAISPGEECDKVFTAICQGKIIDPLLECLKEWDGSPLPI 145
            LG   LTGEK  SPGEE DK+FTAICQGKIIDPLLECL EW+G+PLPI
Sbjct:  458 LGTGLLTGEKVKSPGEEFDKLFTAICQGKIIDPLLECLGEWNGAPLPI 505          
BLAST of GO242446 vs. ExPASy Swiss-Prot
Match: PAL1_ARATH (Phenylalanine ammonia-lyase 1 OS=Arabidopsis thaliana GN=PAL1 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.017e-15
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 LGARYLTGEKAISPGEECDKVFTAICQGKIIDPLLECLKEWDGSPLPI 145
            LG   LTGEK  SPGEE DKVFTAIC+GKIIDP++ECL EW+G+P+PI
Sbjct:  677 LGTELLTGEKVTSPGEEFDKVFTAICEGKIIDPMMECLNEWNGAPIPI 724          
BLAST of GO242446 vs. ExPASy Swiss-Prot
Match: PALY_CITLI (Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.329e-15
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 LGARYLTGEKAISPGEECDKVFTAICQGKIIDPLLECLKEWDGSPLPI 145
            +G   LTGEK  SPGEE DKVFTA+C+GK+IDP+LECLKEW+G+PLPI
Sbjct:  672 IGTSLLTGEKVRSPGEEFDKVFTAMCEGKLIDPMLECLKEWNGAPLPI 719          
The following BLAST results are available for this feature:
BLAST of GO242446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PALY_MEDSA2.050e-1677.08Phenylalanine ammonia-lyase OS=Medicago sativa PE=... [more]
PALY_MALDO2.678e-1677.08Phenylalanine ammonia-lyase (Fragment) OS=Malus do... [more]
PAL2_ARATH2.678e-1670.83Phenylalanine ammonia-lyase 2 OS=Arabidopsis thali... [more]
PAL1_TOBAC3.497e-1675.00Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]
PAL2_IPOBA4.567e-1677.08Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=... [more]
PALY_POPTR1.017e-1579.17Phenylalanine ammonia-lyase OS=Populus trichocarpa... [more]
PALY_BROFI1.017e-1570.83Phenylalanine ammonia-lyase OS=Bromheadia finlayso... [more]
PAL1_PHAVU1.017e-1579.17Phenylalanine ammonia-lyase class 1 (Fragment) OS=... [more]
PAL1_ARATH1.017e-1572.92Phenylalanine ammonia-lyase 1 OS=Arabidopsis thali... [more]
PALY_CITLI1.329e-1572.92Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL... [more]

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Properties
Property NameValue
Genbank description1094 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1258 5, mRNA sequence.