GO242430

Overview
NameGO242430
Unique NameGO242430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of GO242430 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.621e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGG 173
            SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED RTL+DYNIQKESTLHLVLRLRGG
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of GO242430 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.621e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGG 173
            SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED RTL+DYNIQKESTLHLVLRLRGG
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of GO242430 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.621e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGG 173
            SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED RTL+DYNIQKESTLHLVLRLRGG
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of GO242430 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.621e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGG 173
            SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED RTL+DYNIQKESTLHLVLRLRGG
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of GO242430 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.621e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGG 173
            SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED RTL+DYNIQKESTLHLVLRLRGG
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of GO242430 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.621e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGG 173
            SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED RTL+DYNIQKESTLHLVLRLRGG
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of GO242430 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.621e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGG 173
            SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED RTL+DYNIQKESTLHLVLRLRGG
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of GO242430 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.621e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGG 173
            SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED RTL+DYNIQKESTLHLVLRLRGG
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of GO242430 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.621e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGG 173
            SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED RTL+DYNIQKESTLHLVLRLRGG
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of GO242430 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.621e-24
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGG 173
            SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED RTL+DYNIQKESTLHLVLRLRGG
Sbjct:   20 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of GO242430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_OPHHA2.621e-2494.74Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_MOUSE2.621e-2494.74Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]
UBIQ_MANSE2.621e-2494.74Ubiquitin OS=Manduca sexta PE=3 SV=1[more]
UBIQ_MACFA2.621e-2494.74Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]
UBIQ_ICTPU2.621e-2494.74Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV... [more]
UBIQ_HUMAN2.621e-2494.74Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1[more]
UBIQ_HORSE2.621e-2494.74Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2[more]
UBIQ_GORGO2.621e-2494.74Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S... [more]
UBIQ_GEOCY2.621e-2494.74Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_FELCA2.621e-2494.74Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank description1078 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1241 5, mRNA sequence.