GO242427

Overview
NameGO242427
Unique NameGO242427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: BOP1_HUMAN (Ribosome biogenesis protein BOP1 OS=Homo sapiens GN=BOP1 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.805e-31
Identity = 61/108 (56.48%), Postives = 81/108 (75.00%), Query Frame = 1
Query:    4 GSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            GS + KL WFD+DLS+KPYR+L+ H K +  VAFH  YPLFAS SDD +  V HGMVY+DL QNPL+VP+++L+GH  +   GV+D  FHP QPW+ ++GAD  +RL+
Sbjct:  638 GSYDSKLVWFDLDLSTKPYRMLRHHKKALRAVAFHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPLLVPVKVLKGHVLTRDLGVLDVIFHPTQPWVFSSGADGTVRLF 745          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: BOP1_AEDAE (Ribosome biogenesis protein BOP1 homolog OS=Aedes aegypti GN=AAEL001169 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.404e-30
Identity = 63/109 (57.80%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            V + E K+ WFD+DLS++PY+ LK H   I NVAFH  YPLFAS SDD +  V HGMVY+DL QNPLIVPL  L  H   N  G  D  FHP QPWL ++GAD+ +RLY
Sbjct:  757 VATYEKKMMWFDLDLSTRPYQQLKLHHSAIRNVAFHLRYPLFASASDDRSVIVSHGMVYNDLLQNPLIVPLRRLEHHERVNDFGAFDVVFHPTQPWLFSSGADNTVRLY 865          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: BOP1_CULQU (Ribosome biogenesis protein BOP1 homolog OS=Culex quinquefasciatus GN=CPIJ004506 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.903e-30
Identity = 62/109 (56.88%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            V + E K+ WFD+DLS++PY+ LK H   I NVAFH+ YPLFAS SDD +  V HGMVY+DL QN LIVPL  L  H   N  G  D  FHP QPWL ++GAD+ +RLY
Sbjct:  752 VATYEKKMMWFDLDLSTRPYQQLKLHFSAIRNVAFHQRYPLFASASDDRSVIVSHGMVYNDLMQNALIVPLRRLENHERVNDFGAFDVVFHPTQPWLFSSGADNTVRLY 860          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_COPC7 (Ribosome biogenesis protein ERB1 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=ERB1 PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.293e-29
Identity = 56/110 (50.91%), Postives = 80/110 (72.73%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLYC 330
            VG  + KLCWFD++LS KPY+VL+ H + I ++ FH +YPLFAS SDD +  +FH  VY+DL  +PLIVPL+ILRGH  ++G G++  K+ P+ PWL +A AD  + ++C
Sbjct:  641 VGGYDRKLCWFDLELSEKPYKVLRYHSRAIRSLHFHPTYPLFASSSDDGSIQIFHARVYNDLMTDPLIVPLKILRGHQITDGLGILQVKWTPKHPWLLSAAADGTVAVWC 750          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: BOP1_DROSE (Ribosome biogenesis protein BOP1 homolog OS=Drosophila sechellia GN=GM21825 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.206e-29
Identity = 60/109 (55.05%), Postives = 78/109 (71.56%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            V + + K+ WFD+DLS+KPY+ ++ H   + +VAFHR YPLFAS SDD    V HGMVY+DL QNPLIVPL+ L+ H   +  GV+D  +HP QPW+ + GADS IRLY
Sbjct:  675 VSTYDKKMLWFDLDLSTKPYQTMRLHRNAVRSVAFHRRYPLFASGSDDQAVIVSHGMVYNDLLQNPLIVPLKKLQTHEKRDEFGVLDVNWHPVQPWVFSTGADSTIRLY 783          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: BOP1_ANOGA (Ribosome biogenesis protein BOP1 homolog OS=Anopheles gambiae GN=AGAP007128 PE=3 SV=4)

HSP 1 Score: 129.028 bits (323), Expect = 2.206e-29
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            +G+ E +L WFD+DLS+KPY+ L+ H   I +VAFH  YPLFAS  DD +  V HGMVY+DL QNPLIVPL  L+ H   N   V D  FHP QPW+ ++GAD+ +RLY
Sbjct:  756 IGTYEKRLMWFDLDLSTKPYQQLRIHNAAIRSVAFHPRYPLFASAGDDRSVIVSHGMVYNDLLQNPLIVPLRRLKNHAVVNDFSVFDVVFHPTQPWVFSSGADNTVRLY 864          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: BOP1_DROYA (Ribosome biogenesis protein BOP1 homolog OS=Drosophila yakuba GN=GE11901 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.095e-28
Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            V + + K+ WFD+DLS+KPY+ ++ H   + +VAFH  YPLFAS SDD    V HGMVY+DL QNPLIVPL+ L+ H   +  GV+D  +HP QPW+ + GADS IRLY
Sbjct:  675 VSTYDKKMLWFDLDLSTKPYQTMRLHRNAVRSVAFHLRYPLFASGSDDQAVIVSHGMVYNDLLQNPLIVPLKKLQTHEKRDEFGVLDVNWHPVQPWIFSTGADSTIRLY 783          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: BOP1_DROME (Ribosome biogenesis protein BOP1 homolog OS=Drosophila melanogaster GN=CG5033 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.430e-28
Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            V + + K+ WFD+DLS+KPY+ ++ H   + +VAFH  YPLFAS SDD    V HGMVY+DL QNPLIVPL+ L+ H   +  GV+D  +HP QPW+ + GADS IRLY
Sbjct:  675 VSTYDKKMLWFDLDLSTKPYQTMRLHRNAVRSVAFHLRYPLFASGSDDQAVIVSHGMVYNDLLQNPLIVPLKKLQTHEKRDEFGVLDVNWHPVQPWVFSTGADSTIRLY 783          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: BOP1_DROER (Ribosome biogenesis protein BOP1 homolog OS=Drosophila erecta GN=GG21824 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.430e-28
Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            V + + K+ WFD+DLS+KPY+ ++ H   + +VAFH  YPLFAS SDD    V HGMVY+DL QNPLIVPL+ L+ H   +  GV+D  +HP QPW+ + GADS IRLY
Sbjct:  675 VSTYDKKMLWFDLDLSTKPYQTMRLHRNAVRSVAFHLRYPLFASGSDDQAVIVSHGMVYNDLLQNPLIVPLKKLQTHEKRDEFGVLDVNWHPVQPWVFSTGADSTIRLY 783          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: BOP1_DROAN (Ribosome biogenesis protein BOP1 homolog OS=Drosophila ananassae GN=GF11675 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.161e-28
Identity = 58/109 (53.21%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            V + + K+ WFD+DLS+KPY+ ++ H   + +VAFH  YPLFAS SDD    V HGMVY+DL QNPLIVPL+ L+ H      GV+D  +HP QPW+ + GAD  IRLY
Sbjct:  684 VSTYDKKMLWFDLDLSTKPYQTMRLHRNAVRSVAFHLRYPLFASGSDDQAVIVSHGMVYNDLLQNPLIVPLKKLQTHEKREDFGVLDVNWHPIQPWIFSTGADCTIRLY 792          
The following BLAST results are available for this feature:
BLAST of GO242427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
BOP1_HUMAN1.805e-3156.48Ribosome biogenesis protein BOP1 OS=Homo sapiens G... [more]
BOP1_AEDAE3.404e-3057.80Ribosome biogenesis protein BOP1 homolog OS=Aedes ... [more]
BOP1_CULQU9.903e-3056.88Ribosome biogenesis protein BOP1 homolog OS=Culex ... [more]
ERB1_COPC71.293e-2950.91Ribosome biogenesis protein ERB1 OS=Coprinopsis ci... [more]
BOP1_DROSE2.206e-2955.05Ribosome biogenesis protein BOP1 homolog OS=Drosop... [more]
BOP1_ANOGA2.206e-2955.05Ribosome biogenesis protein BOP1 homolog OS=Anophe... [more]
BOP1_DROYA1.095e-2854.13Ribosome biogenesis protein BOP1 homolog OS=Drosop... [more]
BOP1_DROME1.430e-2854.13Ribosome biogenesis protein BOP1 homolog OS=Drosop... [more]
BOP1_DROER1.430e-2854.13Ribosome biogenesis protein BOP1 homolog OS=Drosop... [more]
BOP1_DROAN4.161e-2853.21Ribosome biogenesis protein BOP1 homolog OS=Drosop... [more]

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Properties
Property NameValue
Genbank description1075 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1238 5, mRNA sequence.