GO242427

Overview
NameGO242427
Unique NameGO242427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_YEAS7 (Ribosome biogenesis protein ERB1 OS=Saccharomyces cerevisiae (strain YJM789) GN=ERB1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.524e-25
Identity = 51/107 (47.66%), Postives = 74/107 (69.16%), Query Frame = 1
Query:    7 SREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            S + ++ W D+DL+S PY+ L+ H K + +V FH+  PLF+S +DD T +VFH  VY D+ +NP+IVPL+ L GH   N  GV+D  +HPR+ WL +AGAD+  RL+
Sbjct:  699 SFDKRVLWHDLDLASTPYKTLRYHEKAVRSVNFHKKLPLFSSAADDGTIHVFHATVYDDMMKNPMIVPLKKLTGHKVINSLGVLDAIWHPREAWLFSAGADNTARLW 805          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_USTMA (Ribosome biogenesis protein ERB1 OS=Ustilago maydis GN=ERB1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.524e-25
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGAD 309
            VGS + KL WFD+DLS++PY+VLK H + I +V F  S+ L A  SDD T  +F+  V +D  +N  +VPL++LRGH   NG GV+D K+HP QPWL +AGAD
Sbjct:  822 VGSYDKKLAWFDLDLSARPYKVLKYHARAIRSVHFSTSWNLVADASDDGTLQLFYAKVGADYGENLTLVPLKVLRGHEVKNGLGVLDVKWHPNQPWLFSAGAD 924          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_PHANO (Ribosome biogenesis protein ERB1 OS=Phaeosphaeria nodorum GN=ERB1 PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 3.297e-25
Identity = 54/110 (49.09%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS-YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            VG+ + +L W D+DLS+KPY+ L+ H + I  V FH+   PLFA  SDD +  +FHG V  DL +N  IVPL++LRGH   +  GVMD  +HPR+PW  +AGAD  +RL+
Sbjct:  672 VGTYDKRLLWHDLDLSNKPYKTLRFHKEAIRAVKFHQGGLPLFADASDDGSLQIFHGKVVDDLMENATIVPLKVLRGHKVKSRLGVMDLDWHPREPWCVSAGADGTLRLW 781          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_PICGU (Ribosome biogenesis protein ERB1 OS=Pichia guilliermondii GN=ERB1 PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.306e-25
Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    7 SREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS-YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            S + ++ W D+DLS+ PY+ L+ H K + N+ FH+   PLFAS SDD + +VFHG VY DL  NPL+VPL+ L GH   +  GV+D  +HP++ WL TAGAD   RL+
Sbjct:  681 SYDKRVLWHDLDLSNTPYKTLRYHEKAVRNIKFHKGRLPLFASASDDGSVHVFHGTVYDDLMTNPLLVPLKKLTGHKVVHSLGVLDLVWHPKEAWLFTAGADGTARLW 788          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_KLULA (Ribosome biogenesis protein ERB1 OS=Kluyveromyces lactis GN=ERB1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.623e-25
Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    7 SREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            S + ++ W D+DL+S PY+ L+ H K + +V+FH+  PLF S +DD   +VFH  VY DL +NP+IVPL+ L GH   N  GV+D  +HPR+ WL +AGAD   RL+
Sbjct:  683 SFDKRVLWHDLDLASTPYKTLRYHEKAVRSVSFHKKLPLFCSAADDGNIHVFHATVYDDLMKNPMIVPLKKLTGHKIVNSLGVLDTIWHPREAWLFSAGADKTARLW 789          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_DEBHA (Ribosome biogenesis protein ERB1 OS=Debaryomyces hansenii GN=ERB1 PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.623e-25
Identity = 53/108 (49.07%), Postives = 74/108 (68.52%), Query Frame = 1
Query:    7 SREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS-YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            S + ++ W D+DLSS PY+ L+ H K + ++ FH++  PLFAS SDD + +VFHG VY DL  NPL+VPL+ L GH   N  GV+D  +HP++ WL +AGAD   RL+
Sbjct:  702 SYDKRVLWHDLDLSSTPYKTLRYHDKAVRSIKFHKANLPLFASASDDGSIHVFHGTVYDDLMTNPLLVPLKKLTGHKIINSLGVLDLVWHPKEAWLFSAGADGTARLW 809          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_CANAL (Ribosome biogenesis protein ERB1 OS=Candida albicans GN=ERB1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.623e-25
Identity = 51/109 (46.79%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    4 GSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHR-SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            GS + ++ W D++LS+ PY+ L+ H K + ++ FH+ + PLFAS SDD   ++FHG VY DL  NPL+VPL+ L GH   N  G++D  +HP++PWL +AGAD   RL+
Sbjct:  739 GSYDKRVLWHDLNLSATPYKTLRYHEKAVRSIKFHKGNLPLFASASDDGNIHIFHGTVYDDLMTNPLLVPLKKLNGHKIINQIGILDLIWHPKEPWLFSAGADGTARLW 847          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_AJECN (Ribosome biogenesis protein ERB1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=ERB1 PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.623e-25
Identity = 53/109 (48.62%), Postives = 71/109 (65.14%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            VGS + +L W D+DLS +PY+ L+ H K I  V +H +YPLFA  SDD +  +FHG V  DL  N  IVPL++LRGH  +   GV+D  +HPR+ W  +AGAD   RL+
Sbjct:  679 VGSYDRRLLWHDVDLSPRPYKTLRYHQKAIRAVRYHSNYPLFADASDDGSLQIFHGSVTGDLLSNASIVPLKVLRGHKVTGELGVLDLDWHPREAWCVSAGADGTCRLW 787          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_NEUCR (Ribosome biogenesis protein erb-1 OS=Neurospora crassa GN=erb-1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.344e-25
Identity = 52/110 (47.27%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS-YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            VGS + +L W D+DLS +PY+ ++ H + +  V +HR   PLFA  SDD T  +FHG V +D  +NP IVP+++L+GH   N  GV+D  +HPR+PW  +AGAD  IRL+
Sbjct:  669 VGSYDKRLLWHDLDLSIRPYKTMRFHSEAVRQVKYHRGGLPLFADASDDGTLQIFHGKVPNDQLENPTIVPVKVLKGHKVVNKLGVLDMDWHPREPWCVSAGADGTIRLW 778          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_MAGGR (Ribosome biogenesis protein ERB1 OS=Magnaporthe grisea GN=ERB1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.636e-24
Identity = 53/110 (48.18%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS-YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            VGS + +L W D+DLS++PY+ ++ HP+ I  V +HR   PLFA  SDD +  +FHG V SDL +N  IVPL+ L+GH   +  GVMD  +HP +PW  +AGAD   RL+
Sbjct:  667 VGSYDRRLLWHDLDLSTRPYKTMRFHPQAIRAVKYHRGGLPLFADASDDGSLQIFHGKVVSDLMENATIVPLKSLKGHRVVDSLGVMDVDWHPSEPWCISAGADGTCRLW 776          
The following BLAST results are available for this feature:
BLAST of GO242427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERB1_YEAS72.524e-2547.66Ribosome biogenesis protein ERB1 OS=Saccharomyces ... [more]
ERB1_USTMA2.524e-2552.43Ribosome biogenesis protein ERB1 OS=Ustilago maydi... [more]
ERB1_PHANO3.297e-2549.09Ribosome biogenesis protein ERB1 OS=Phaeosphaeria ... [more]
ERB1_PICGU4.306e-2549.07Ribosome biogenesis protein ERB1 OS=Pichia guillie... [more]
ERB1_KLULA5.623e-2547.66Ribosome biogenesis protein ERB1 OS=Kluyveromyces ... [more]
ERB1_DEBHA5.623e-2549.07Ribosome biogenesis protein ERB1 OS=Debaryomyces h... [more]
ERB1_CANAL5.623e-2546.79Ribosome biogenesis protein ERB1 OS=Candida albica... [more]
ERB1_AJECN5.623e-2548.62Ribosome biogenesis protein ERB1 OS=Ajellomyces ca... [more]
ERB1_NEUCR7.344e-2547.27Ribosome biogenesis protein erb-1 OS=Neurospora cr... [more]
ERB1_MAGGR1.636e-2448.18Ribosome biogenesis protein ERB1 OS=Magnaporthe gr... [more]

Pages

back to top
Properties
Property NameValue
Genbank description1075 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1238 5, mRNA sequence.