GO242427

Overview
NameGO242427
Unique NameGO242427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_BOTFB (Ribosome biogenesis protein erb1 OS=Botryotinia fuckeliana (strain B05.10) GN=erb1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.137e-24
Identity = 51/110 (46.36%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS-YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            VGS + +L W D+DLS++PY+ ++ H K I  V +H+   PLFA  SDD +  +FHG V SD  +N  IVP+++L+GH   +  GVMD  +HP++PWL +AGAD   RL+
Sbjct:  653 VGSYDRRLLWHDLDLSTRPYKTMRFHNKAIRAVKYHKGGLPLFADASDDGSLQIFHGKVVSDAMENATIVPVKVLKGHKVKSALGVMDLDWHPKEPWLVSAGADGTCRLW 762          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_YARLI (Ribosome biogenesis protein ERB1 OS=Yarrowia lipolytica GN=ERB1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.791e-24
Identity = 49/110 (44.55%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS-YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            + S + +L W D+DLS KPY+ L+ H K + + AFH+   PLF S SDD    +FHG VY D+  NPL+VPL++L+GH   +G G++  ++HPR+ WL +A AD   +L+
Sbjct:  709 LSSFDKRLLWHDLDLSDKPYKTLRYHEKAVRHAAFHKGGLPLFCSASDDGNINIFHGTVYDDMMTNPLLVPLKVLKGHDVKSGLGILRVEWHPREAWLFSAAADGTAKLW 818          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_COCIM (Ribosome biogenesis protein ERB1 OS=Coccidioides immitis GN=ERB1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.791e-24
Identity = 52/109 (47.71%), Postives = 70/109 (64.22%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            VGS + +L W D+DLS +PY+ L+ H K I  V +H  YPLFA  SDD +  +FHG V  DL  N  IVPL++L+GH  +   GV+D  +HPR+ W  +AGAD   RL+
Sbjct:  734 VGSYDRRLLWHDVDLSDRPYKTLRYHQKAIRAVKYHPHYPLFADTSDDGSLQIFHGSVTGDLLSNANIVPLKVLKGHKVTGDLGVLDLDWHPREAWCVSAGADGTCRLW 842          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_PICST (Ribosome biogenesis protein ERB1 OS=Pichia stipitis GN=ERB1 PE=3 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 4.760e-24
Identity = 50/108 (46.30%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    7 SREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHR-SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            S + ++ W D+DLS+ PY+ L+ H K + ++ FH+ + PLFAS SDD   ++FHG VY DL  NPL+VPL+ L GH   N  G++D  +HP++ WL +AGAD   RL+
Sbjct:  700 SYDKRVLWHDLDLSATPYKTLRYHEKAVRSIKFHKGNLPLFASASDDGNIHIFHGTVYDDLMTNPLLVPLKKLTGHKIVNSIGILDLIWHPKEAWLFSAGADGTARLW 807          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_PYRTR (Ribosome biogenesis protein @(ERB1) OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=erb1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.217e-24
Identity = 52/110 (47.27%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS-YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            VG+ + +L W D+DLS+KPY+ L+ H + I  V FH+   PLFA  SDD T  +FHG V  DL +N  IVPL++L+GH   +  GVM   +HP++PW  +AGAD  +RL+
Sbjct:  671 VGTYDKRLLWHDLDLSNKPYKTLRFHKEAIRAVRFHQGGLPLFADTSDDGTIQIFHGKVVGDLMENATIVPLKVLKGHKVRSRLGVMGLDWHPKEPWCVSAGADGTLRLW 780          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_NEOFI (Ribosome biogenesis protein ERB1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=erb1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.061e-23
Identity = 52/111 (46.85%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS--YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            VGS + +L W D++LS +PY+ L+ H K I  V FH    YPLFA  SDD +  +FHG V  D+  N  IVPL++L+GH  +   GV+D  +HPR+PW  +AGAD   RL+
Sbjct:  679 VGSYDRRLLWHDLELSQRPYKTLRYHRKAIRAVKFHPGGRYPLFADASDDGSLQIFHGSVTGDMLSNATIVPLKVLKGHKITGELGVLDVDWHPREPWCVSAGADGTCRLW 789          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_ASPFU (Ribosome biogenesis protein erb1 OS=Aspergillus fumigatus GN=erb1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.061e-23
Identity = 52/111 (46.85%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS--YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            VGS + +L W D++LS +PY+ L+ H K I  V FH    YPLFA  SDD +  +FHG V  D+  N  IVPL++L+GH  +   GV+D  +HPR+PW  +AGAD   RL+
Sbjct:  684 VGSYDRRLLWHDLELSQRPYKTLRYHRKAIRAVKFHPGGRYPLFADASDDGSLQIFHGSVTGDMLSNATIVPLKVLKGHKITGELGVLDVDWHPREPWCVSAGADGTCRLW 794          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_ASPFC (Ribosome biogenesis protein erb1 OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=erb1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.061e-23
Identity = 52/111 (46.85%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS--YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            VGS + +L W D++LS +PY+ L+ H K I  V FH    YPLFA  SDD +  +FHG V  D+  N  IVPL++L+GH  +   GV+D  +HPR+PW  +AGAD   RL+
Sbjct:  685 VGSYDRRLLWHDLELSQRPYKTLRYHRKAIRAVKFHPGGRYPLFADASDDGSLQIFHGSVTGDMLSNATIVPLKVLKGHKITGELGVLDVDWHPREPWCVSAGADGTCRLW 795          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_ASPCL (Ribosome biogenesis protein erb1 OS=Aspergillus clavatus GN=erb1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.061e-23
Identity = 52/111 (46.85%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS--YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            VGS + +L W D++LS +PY+ L+ H K I  V FH    YPLFA  SDD +  +FHG V  D+  N  IVPL++L+GH  +   GV+D  +HPR+PW  +AGAD   RL+
Sbjct:  677 VGSYDRRLLWHDLELSQRPYKTLRYHRKAIRAVKFHPGGRYPLFADASDDGSLQIFHGSVTGDMLSNATIVPLKVLKGHKITGELGVLDIDWHPREPWCVSAGADGTCRLW 787          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_LODEL (Ribosome biogenesis protein ERB1 OS=Lodderomyces elongisporus GN=ERB1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.385e-23
Identity = 51/108 (47.22%), Postives = 72/108 (66.67%), Query Frame = 1
Query:    7 SREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHR-SYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            S + ++ W D+DL++ PY+ L+ H K +  + +H+ S PLFAS SDD   +VFHG VY DL  NPL+VPL+ L GH   N  GV+D  +HP++ WL +AGAD   RL+
Sbjct:  765 SYDKRVLWHDLDLAATPYKTLRYHEKAVRQIKYHKGSLPLFASASDDGIIHVFHGTVYDDLMTNPLLVPLKKLSGHKVINQIGVLDIVWHPKEAWLFSAGADGTARLW 872          
The following BLAST results are available for this feature:
BLAST of GO242427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERB1_BOTFB2.137e-2446.36Ribosome biogenesis protein erb1 OS=Botryotinia fu... [more]
ERB1_YARLI2.791e-2444.55Ribosome biogenesis protein ERB1 OS=Yarrowia lipol... [more]
ERB1_COCIM2.791e-2447.71Ribosome biogenesis protein ERB1 OS=Coccidioides i... [more]
ERB1_PICST4.760e-2446.30Ribosome biogenesis protein ERB1 OS=Pichia stipiti... [more]
ERB1_PYRTR6.217e-2447.27Ribosome biogenesis protein @(ERB1) OS=Pyrenophora... [more]
ERB1_NEOFI1.061e-2346.85Ribosome biogenesis protein ERB1 OS=Neosartorya fi... [more]
ERB1_ASPFU1.061e-2346.85Ribosome biogenesis protein erb1 OS=Aspergillus fu... [more]
ERB1_ASPFC1.061e-2346.85Ribosome biogenesis protein erb1 OS=Aspergillus fu... [more]
ERB1_ASPCL1.061e-2346.85Ribosome biogenesis protein erb1 OS=Aspergillus cl... [more]
ERB1_LODEL1.385e-2347.22Ribosome biogenesis protein ERB1 OS=Lodderomyces e... [more]

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Properties
Property NameValue
Genbank description1075 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1238 5, mRNA sequence.