GO242427

Overview
NameGO242427
Unique NameGO242427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_ASPOR (Ribosome biogenesis protein erb1 OS=Aspergillus oryzae GN=erb1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.809e-23
Identity = 52/111 (46.85%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS--YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            VGS + +L W D++LS +PY+ L+ H K I +V FH S  YPLFA  SDD +  +FHG V  D+  N  IVPL++L+GH  +   GV+D  +HPR+ W  +AGAD   RL+
Sbjct:  672 VGSYDRRLLWHDLELSQRPYKTLRYHRKAIRSVRFHPSGRYPLFADASDDGSLQIFHGSVTGDMLSNASIVPLKVLKGHKITGELGVLDVDWHPREAWCVSAGADGTCRLW 782          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_ASPNC (Ribosome biogenesis protein erb1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=erb1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.809e-23
Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS--YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            VGS + +L W D++LS +PY+ L+ H K I  V FH S  YPLFA  SDD +  +FHG V  D+  N  IVPL++L+GH  +   GVMD  +HPR+ W  +AGAD   RL+
Sbjct:  677 VGSYDRRLLWHDLELSQRPYKTLRYHRKAIRAVKFHPSGRYPLFADASDDGSLQIFHGSVTGDMLSNASIVPLKVLKGHKITGELGVMDLDWHPREAWCVSAGADGTCRLW 787          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_CHAGB (Ribosome biogenesis protein ERB1 OS=Chaetomium globosum GN=ERB1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.363e-23
Identity = 50/110 (45.45%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS-YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            VGS + +L W D+DLS++PY+ ++ H + I  V +HR   PLFA  SDD +  +FHG V +D  +NP IVP+++L+GH   +  GV+D  +HPR+PW  +AGAD   RL+
Sbjct:  672 VGSYDKRLLWHDLDLSNRPYKTMRFHGQAIRQVRYHRGGLPLFADASDDGSLQIFHGKVPNDQLENPTIVPVKMLKGHKVVSKLGVLDIDWHPREPWCVSAGADGTARLW 781          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_PODAN (Ribosome biogenesis protein ERB1 OS=Podospora anserina GN=ERB1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.030e-23
Identity = 51/110 (46.36%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS-YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            VGS + +L W D+DLS++P++ ++ HPK I  V FH+   PLFA  SDD T  +F+G V +D  ++P IVP++ L+GH   N  GV+D  +HPR+PW  +AGAD   RL+
Sbjct:  674 VGSYDRRLLWHDLDLSNRPHKTMRFHPKAIRAVRFHKGGLPLFADASDDGTLQIFYGKVPNDQLESPTIVPVKQLKGHKVVNQVGVVDIDWHPREPWCVSAGADGTARLW 783          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_EMENI (Ribosome biogenesis protein erb1 OS=Emericella nidulans GN=erb1 PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.263e-23
Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS--YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            VGS + +L W D++LS +PY+ L+ H K I  V FH    YPLFA  SDD +  +FHG V  D+  N  IVPL++LRGH  +   GV+D  +HPR+ W  +AGAD   RL+
Sbjct:  682 VGSYDRRLLWHDLELSQRPYKTLRYHRKAIRAVKFHPGGRYPLFADASDDGSLQIFHGNVTGDMLSNATIVPLKVLRGHKITGELGVLDIDWHPREAWCVSAGADGTCRLW 792          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_ASPTN (Ribosome biogenesis protein erb1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=erb1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.263e-23
Identity = 51/111 (45.95%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRS--YPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            VGS + +L W D++LS +PY+ L+ H K I +V FH    YPLFA  SDD +  +FHG V  D+  N  IVPL++L+GH  +   GV+D  +HPR+ W  +AGAD   RL+
Sbjct:  673 VGSYDRRLLWHDLELSQRPYKTLRYHRKAIRSVKFHPGGRYPLFADASDDGSLQIFHGSVTGDMLSNASIVPLKVLKGHKITGELGVLDVDWHPREAWCVSAGADGTCRLW 783          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: ERB1_CANGA (Ribosome biogenesis protein ERB1 OS=Candida glabrata GN=ERB1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.000e-22
Identity = 44/107 (41.12%), Postives = 70/107 (65.42%), Query Frame = 1
Query:    7 SREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVIRLY 327
            S + ++ W D+DL++ PY+ L+ H K + +  FH+  PLF S +DD   ++FH  VY D+ +NP+IVPL+ L GH      GV+D  +HP++ WL +AGAD+  R++
Sbjct:  697 SYDKRVLWHDLDLAATPYKTLRYHDKAVRSTTFHKKLPLFCSAADDGFIHIFHATVYDDMMKNPMIVPLKKLTGHKVQGHLGVLDTIWHPKEAWLFSAGADNTARMW 803          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: BOP1_CAEBR (Ribosome biogenesis protein BOP1 homolog OS=Caenorhabditis briggsae GN=CBG20902 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.170e-20
Identity = 43/112 (38.39%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGH-TSSNGRGVMDCKFHPRQPWLSTAGADSVIRLYCH 333
            +G  + + CW D+ + +KP++ LK H   + +VA+H+ YPL A+ SDD TA V++  +YSD +++  + P++ LR H  +SN   ++   +HP QPWL T GAD  I L+ +
Sbjct:  560 LGGLDRRFCWMDLQMGNKPWKKLKHHTAAVRSVAYHKKYPLLATVSDDGTAMVYYARIYSDFSKDNELYPVKRLRAHERTSNDLCMLHTTWHPTQPWLITTGADGTIALFTY 671          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: BOP1_CAEEL (Ribosome biogenesis protein BOP1 homolog OS=Caenorhabditis elegans GN=Y48B6A.1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 42/112 (37.50%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSS-NGRGVMDCKFHPRQPWLSTAGADSVIRLYCH 333
            +G  + + CW D+ + +KP++ LK H   + +VA+H+ YPL A+ SDD TA V++  +Y+D  ++  + P++ LR H  + N   ++   +HP QPWL TAGAD  I L+ +
Sbjct:  563 LGGLDRRFCWMDLQMGNKPWKKLKHHTAAVRSVAYHKKYPLLATVSDDGTAMVYYARIYTDFVKDNELYPVKRLRAHEKTPNDLCMLHTTWHPTQPWLITAGADGTIALFTY 674          
BLAST of GO242427 vs. ExPASy Swiss-Prot
Match: BOP1_LEIMA (Ribosome biogenesis protein BOP1 homolog OS=Leishmania major GN=LmjF11.0410 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.316e-17
Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    1 VGSREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFH---RSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLSTAGADSVI 318
            VG       WFDMD S KPY+ ++ H   +  +AFH    +YPLFA+ + D   +VFHGMVY D N+N L+VP++IL+     + R V    +HP   WL T+  D V+
Sbjct:  700 VGDTTSHTSWFDMDFSDKPYKRMRSHKGVVNALAFHPKTNAYPLFATGASDGQVHVFHGMVYDDYNKNALVVPVKILK-----HQRPVYAVAWHPTLAWLFTSTEDGVV 803          
The following BLAST results are available for this feature:
BLAST of GO242427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERB1_ASPOR1.809e-2346.85Ribosome biogenesis protein erb1 OS=Aspergillus or... [more]
ERB1_ASPNC1.809e-2347.75Ribosome biogenesis protein erb1 OS=Aspergillus ni... [more]
ERB1_CHAGB2.363e-2345.45Ribosome biogenesis protein ERB1 OS=Chaetomium glo... [more]
ERB1_PODAN4.030e-2346.36Ribosome biogenesis protein ERB1 OS=Podospora anse... [more]
ERB1_EMENI5.263e-2346.85Ribosome biogenesis protein erb1 OS=Emericella nid... [more]
ERB1_ASPTN5.263e-2345.95Ribosome biogenesis protein erb1 OS=Aspergillus te... [more]
ERB1_CANGA2.000e-2241.12Ribosome biogenesis protein ERB1 OS=Candida glabra... [more]
BOP1_CAEBR4.170e-2038.39Ribosome biogenesis protein BOP1 homolog OS=Caenor... [more]
BOP1_CAEEL2.703e-1937.50Ribosome biogenesis protein BOP1 homolog OS=Caenor... [more]
BOP1_LEIMA4.316e-1741.28Ribosome biogenesis protein BOP1 homolog OS=Leishm... [more]

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Properties
Property NameValue
Genbank description1075 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1238 5, mRNA sequence.