GO242369

Overview
NameGO242369
Unique NameGO242369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of GO242369 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.778e-11
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    7 EGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGF 147
            +G +  C+SG   +++PPP GPLWILGDVF+G+Y+TVFD    RVGF
Sbjct:  346 QGGKTICLSGLMGLEIPPPAGPLWILGDVFIGQYYTVFDRESNRVGF 392
[Close]
BLAST of GO242369 vs. ExPASy Swiss-Prot
Match: CATE_RANCA (Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:   25 CISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGF 147
            C SGF  +D+ PP GPLWILGDVF+G+Y++VFD G  RVGF
Sbjct:  344 CSSGFQGLDISPPSGPLWILGDVFIGQYYSVFDRGNNRVGF 384
The following BLAST results are available for this feature:
BLAST of GO242369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CATD_CLUHA5.778e-1157.45Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
CATE_RANCA9.855e-1165.85Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank description1017 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 1175 5, mRNA sequence.