GO242170

Overview
NameGO242170
Unique NameGO242170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242170 vs. ExPASy Swiss-Prot
Match: YKT6_MOUSE (Synaptobrevin homolog YKT6 OS=Mus musculus GN=Ykt6 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.600e-38
Identity = 93/202 (46.04%), Postives = 127/202 (62.87%), Query Frame = 2
Query:  104 MKITALLVL-KCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 700
            MK+ +L VL K +P     V+L  A DVS F +FQRSSV+EF+ F ++ + +R+  G R SV+ +EY  H Y R+  L  +   D  YP R +F+LL +VLDE+ K      W       +Q +  L++ L+KYQ+P EAD + K+Q ELDETKIILH T++S+L RGEKLD LV KS  L   S+ FYK A+K N CC I+
Sbjct:    1 MKLYSLSVLYKGDPKA---VLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSGKGSRASVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIQ-YTGLDDHLSKYQNPREADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNSCCAIM 198          
BLAST of GO242170 vs. ExPASy Swiss-Prot
Match: YKT6_HUMAN (Synaptobrevin homolog YKT6 OS=Homo sapiens GN=YKT6 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.565e-38
Identity = 85/183 (46.45%), Postives = 117/183 (63.93%), Query Frame = 2
Query:  158 VVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 700
            V+L  A DVS F +FQRSSV+EF+ F ++ + +R+  G R SV+ ++Y  H Y RN  L  +   D+ YP R +F+LL +VLDE+ K      W       +  +P L+  L++YQ+P EAD + K+Q ELDETKIILH T++S+L RGEKLD LV KS  L   S+ FYK A+K N CC I+
Sbjct:   17 VLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSSKGTRASVKEQDYLCHVYVRNDSLAGVVIADNEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIH-YPALDGHLSRYQNPREADPMTKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNSCCAIM 198          
BLAST of GO242170 vs. ExPASy Swiss-Prot
Match: YKT6_RAT (Synaptobrevin homolog YKT6 OS=Rattus norvegicus GN=Ykt6 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.724e-37
Identity = 84/183 (45.90%), Postives = 115/183 (62.84%), Query Frame = 2
Query:  158 VVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 700
            V+L  A DVS F +FQRSSV+EF+ F ++ + +R+  G R SV+ +EY  H Y R+  L  +   D  YP R +F+LL +VLDE+ K      W       +  +  L+  L++YQ+P EAD + K+Q ELDETKIILH T++S+L RGEKLD LV KS  L   S+ FYK A+K N CC I+
Sbjct:   17 VLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIH-YTALDGHLSRYQNPREADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNSCCAIM 198          
BLAST of GO242170 vs. ExPASy Swiss-Prot
Match: YKT6B_XENLA (Synaptobrevin homolog YKT6-B OS=Xenopus laevis GN=ykt6-B PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 8.782e-37
Identity = 89/202 (44.06%), Postives = 126/202 (62.38%), Query Frame = 2
Query:  104 MKITALLVLKCNPDGSDPV-VLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 700
            MK+ +L VL     G + V +L +A DVS F +FQRSSV+EF+ F ++ + +R+  G R SV+ +EY  H Y RN  L  +   D+ YP R  F+LL +VL+E+        W +     +Q +  L+  L+KYQ+P +AD + K+Q ELDETKI+LH T++S+L RGEKLD LV KS  L   S+ FYK A+K N CC I+
Sbjct:    1 MKLYSLSVLY---KGENKVHLLKSAYDVSSFSFFQRSSVQEFMTFTSQLIVERSDKGSRSSVKEQEYLCHVYVRNDSLAGVVIADNEYPPRVCFTLLEKVLEEFSTQVDRIDWPSGSPATIQ-YNALDSYLSKYQNPRDADPMSKVQAELDETKIVLHNTMESLLQRGEKLDDLVSKSEVLGTQSKAFYKTARKQNSCCDIM 198          
BLAST of GO242170 vs. ExPASy Swiss-Prot
Match: YKT6A_XENLA (Synaptobrevin homolog YKT6-A OS=Xenopus laevis GN=ykt6-A PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 8.782e-37
Identity = 89/202 (44.06%), Postives = 126/202 (62.38%), Query Frame = 2
Query:  104 MKITALLVLKCNPDGSDPV-VLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 700
            MK+ +L VL     G + V +L +A DVS F +FQRSS++EF+ F ++ + +R+  G R SV+ +EY  H Y RN  L  +   D+ YP R  F+LL +VL+E+        W +     +Q +  L+  L+KYQ+P +AD + K+Q ELDETKIILH T++S+L RGEKLD LV KS  L   S+ FYK A+K N CC I+
Sbjct:    1 MKLYSLSVLY---KGENKVHLLKSAYDVSSFSFFQRSSIQEFMAFTSQLIVERSDKGSRSSVKEQEYLCHVYVRNDSLAGVVIADNEYPPRVCFTLLEKVLEEFSTQVDRIDWPSGSPATIQ-YNALDSYLSKYQNPRDADPMSKVQAELDETKIILHNTMESLLQRGEKLDDLVSKSEVLGTQSKAFYKTARKQNSCCDIM 198          
BLAST of GO242170 vs. ExPASy Swiss-Prot
Match: YKT6_XENTR (Synaptobrevin homolog YKT6 OS=Xenopus tropicalis GN=ykt6 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.147e-36
Identity = 89/202 (44.06%), Postives = 126/202 (62.38%), Query Frame = 2
Query:  104 MKITALLVLKCNPDGSDPV-VLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 700
            MK+ +L VL     G + V +L +A DVS F +FQRSS++EF+ F ++ + +R+  G R SV+ +EY  H Y RN  L  +   D+ YP R  F+LL +VL+E+        W +     +Q +  L+  L+KYQ+P +AD + K+Q ELDETKIILH T++S+L RGEKLD LV KS  L   S+ FYK A+K N CC I+
Sbjct:    1 MKLYSLSVLY---KGDNKVSLLKSAYDVSSFSFFQRSSIQEFMAFTSQLIVERSDKGSRSSVKEQEYLCHVYVRNDSLAGVVIADNEYPPRVCFTLLEKVLEEFSTQVDRIDWPSGSPATIQ-YNALDSYLSKYQNPRDADPMSKVQAELDETKIILHNTMESLLQRGEKLDDLVSKSEVLGTQSKAFYKTARKQNSCCGIM 198          
BLAST of GO242170 vs. ExPASy Swiss-Prot
Match: YKT6_DANRE (Synaptobrevin homolog YKT6 OS=Danio rerio GN=ykt6 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.337e-36
Identity = 87/201 (43.28%), Postives = 123/201 (61.19%), Query Frame = 2
Query:  104 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 700
            MK+ +L VL  +   +   +L    D+S F +FQRSSV+EF+ F +  + +R+  G R SV+ +EY  H Y RN  L  +   D  YP R  F+LL++VLDE+ +      W +     +Q +  L+  L +YQ+P EAD + K+Q ELDETKIILH T++S+L RGEKLD LV+KS  L   S+ FYK A+K N CC I+
Sbjct:    1 MKLYSLSVL--HKGSTKANLLKATYDLSSFSFFQRSSVQEFMTFTSALIVERSALGSRASVKEQEYLCHVYVRNDNLGGVVIADSEYPSRVCFTLLDKVLDEFSRQVNSIDWPSGSPATIQ-YTALDSHLARYQNPREADAMTKVQAELDETKIILHNTMESLLERGEKLDDLVQKSEHLGNQSKAFYKTARKQNSCCEIM 198          
BLAST of GO242170 vs. ExPASy Swiss-Prot
Match: YKT6_DICDI (Putative synaptobrevin homolog YKT6 OS=Dictyostelium discoideum GN=ykt6 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.604e-30
Identity = 79/200 (39.50%), Postives = 117/200 (58.50%), Query Frame = 2
Query:  104 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSY---NRNGLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFGES-WRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCC 691
            MK+ ++ + K  P G+ PV+L    ++S FG+FQR SVKE  LFV+R    RT  G+R S++H + +   +   +  GL      D  YP R + +L+   L+E+ K   ES WR  Q+D     P L++ L KYQ+P  AD ++ +Q+ LDET  I+ KT++ +  RGEKLD L  KS DLS  S+ F   A++ N+CC
Sbjct:    1 MKVYSIGLFKVVP-GNKPVLLNIVYELSSFGFFQRGSVKEVSLFVSRETVGRTNVGERVSMEHTQTQKVCHTTVDSKGLGCSVLTDSEYPGRVAHTLIRICLEEFYKVHPESEWRGLQSDVELQTPALDQLLLKYQNPETADPMMNLQKNLDETITIVKKTVEQLGQRGEKLDDLAAKSDDLSFQSKAFMNNAERMNKCC 199          
BLAST of GO242170 vs. ExPASy Swiss-Prot
Match: SEC22_SCHPO (Protein transport protein sec22 OS=Schizosaccharomyces pombe GN=sec22 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.573e-12
Identity = 43/156 (27.56%), Postives = 79/156 (50.64%), Query Frame = 2
Query:  239 ARTVGKRTPPG--QRQSVQHEEYKVHSYNRNGLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPWPY------LNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTN 682
            A+ + KR  P   +R S++  +Y  H    NG+C +   +  YP + +FS L ++  E+  +FGE    A    ++P+ +      + ++   Y  P   D L K+  EL +   ++ K I+ +L RG+ L+ + + SSDL  +S  + K A++ N
Sbjct:   29 AKLILKRLSPTSEKRASIESGDYTFHYLIDNGICYLCICEQSYPRKLAFSYLEELAGEFWNSFGEE---ALQPGLRPYAFVQFDTFMQKSKRVYNTPRANDNLDKLNTELKDVTRVMTKNIEDLLYRGDSLEKMADLSSDLRYSSAKYKKAARRVN 181          
The following BLAST results are available for this feature:
BLAST of GO242170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
YKT6_MOUSE1.600e-3846.04Synaptobrevin homolog YKT6 OS=Mus musculus GN=Ykt6... [more]
YKT6_HUMAN3.565e-3846.45Synaptobrevin homolog YKT6 OS=Homo sapiens GN=YKT6... [more]
YKT6_RAT6.724e-3745.90Synaptobrevin homolog YKT6 OS=Rattus norvegicus GN... [more]
YKT6B_XENLA8.782e-3744.06Synaptobrevin homolog YKT6-B OS=Xenopus laevis GN=... [more]
YKT6A_XENLA8.782e-3744.06Synaptobrevin homolog YKT6-A OS=Xenopus laevis GN=... [more]
YKT6_XENTR1.147e-3644.06Synaptobrevin homolog YKT6 OS=Xenopus tropicalis G... [more]
YKT6_DANRE3.337e-3643.28Synaptobrevin homolog YKT6 OS=Danio rerio GN=ykt6 ... [more]
YKT6_DICDI1.604e-3039.50Putative synaptobrevin homolog YKT6 OS=Dictyosteli... [more]
SEC22_SCHPO2.573e-1227.56Protein transport protein sec22 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank description818 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 964 5, mRNA sequence.