GO242080

Overview
NameGO242080
Unique NameGO242080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242080 vs. ExPASy Swiss-Prot
Match: G3PC_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Scenedesmus vacuolatus GN=GapC PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.123e-20
Identity = 48/64 (75.00%), Postives = 53/64 (82.81%), Query Frame = 1
Query:    1 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWG 192
            ++I AA+KA SEG +KGILGYTEDDVVS+DFV D  SS  DAKAGI LS  FVKLVSWYDNEWG
Sbjct:  249 EDIMAALKAASEGPMKGILGYTEDDVVSSDFVSDPASSTVDAKAGIMLSPTFVKLVSWYDNEWG 312          
BLAST of GO242080 vs. ExPASy Swiss-Prot
Match: G3P_MESAU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Mesocricetus auratus GN=GAPDH PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.466e-20
Identity = 48/69 (69.57%), Postives = 54/69 (78.26%), Query Frame = 1
Query:    1 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRV 207
            ++IK  +K  SEG LKGILGYTED VVS DF  DS SS FDA AGIAL+  FVKL+SWYDNE+GYS RV
Sbjct:  244 EDIKKVVKQASEGPLKGILGYTEDQVVSCDFKSDSHSSTFDAGAGIALNDNFVKLISWYDNEFGYSNRV 312          
BLAST of GO242080 vs. ExPASy Swiss-Prot
Match: G3P_BUCAI (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gapA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.466e-20
Identity = 46/77 (59.74%), Postives = 64/77 (83.12%), Query Frame = 1
Query:    4 EIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 234
            EI   I+  S+ ++KGI+GYTED+VVSTDF G+  +SIFDAKAG++L+K FVKL++WYDNE GYS++V+DL+  +SK
Sbjct:  255 EICQKIQQASQKEMKGIMGYTEDEVVSTDFNGEELTSIFDAKAGLSLNKNFVKLIAWYDNETGYSSKVLDLVSLVSK 331          
BLAST of GO242080 vs. ExPASy Swiss-Prot
Match: G3PC_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 2.501e-20
Identity = 47/77 (61.04%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    4 EIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 234
            +I  AIKA SEG+LKGILGY ++++VS+D  G   +S+FDA+AGI+L+  FVKLVSWYDNE GYS +V DLI H++K
Sbjct:  255 QICDAIKAASEGELKGILGYVDEEIVSSDINGIPLTSVFDARAGISLNDNFVKLVSWYDNETGYSNKVHDLIAHITK 331          
BLAST of GO242080 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.267e-20
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 234
            D+I  A+K  SE  LKGIL YT++ VVS+DF+G   SSIFDA AGIAL+ +F KLV+WYDNE GY+TR+VDL+ ++ K
Sbjct:  255 DDICKAMKQASETDLKGILDYTDEQVVSSDFIGSEYSSIFDALAGIALNDRFFKLVAWYDNETGYATRIVDLLEYVEK 332          
BLAST of GO242080 vs. ExPASy Swiss-Prot
Match: G3P1_GLORO (Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragment) OS=Globodera rostochiensis GN=GPD-1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.572e-20
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 1
Query:    1 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEW 189
            D IKAA+K  +EG LKGILGYTED VVSTDF+GDSRSSIFDA A I+L+  FVKLVSWYDNE+
Sbjct:  262 DAIKAAVKKAAEGNLKGILGYTEDQVVSTDFLGDSRSSIFDAGACISLNPHFVKLVSWYDNEF 324          
BLAST of GO242080 vs. ExPASy Swiss-Prot
Match: G3PG_TRYCR (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.277e-20
Identity = 45/80 (56.25%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    4 EIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKA----GIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 231
            EI AA+K  S+  +KGILGYT++++VS DF+ D+RSSI+D+KA     +   ++F K+VSWYDNEWGYS RVVDL+ HM+
Sbjct:  272 EIDAALKRASKTYMKGILGYTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351          
BLAST of GO242080 vs. ExPASy Swiss-Prot
Match: G3PG_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.117e-19
Identity = 45/80 (56.25%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    4 EIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKA----GIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 231
            EI AA+K  S+  +K ILGYT++++VS DF+ DSRSSI+D+KA     +   ++F K+VSWYDNEWGYS RVVDL+ HM+
Sbjct:  272 EIDAALKRASKTYMKNILGYTDEELVSADFISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351          
BLAST of GO242080 vs. ExPASy Swiss-Prot
Match: G3P2_DROSU (Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragment) OS=Drosophila subobscura GN=Gapdh2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.161e-19
Identity = 42/62 (67.74%), Postives = 54/62 (87.10%), Query Frame = 1
Query:    1 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNE 186
            DEIKA ++  + G LKGILGYT+++VVSTDF+ D+ SS+FDAKAGI+L+ KFVKL+SWYDNE
Sbjct:  243 DEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNE 304          
BLAST of GO242080 vs. ExPASy Swiss-Prot
Match: G3PG_CRIFA (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Crithidia fasciculata GN=GAPDG PE=3 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 1.792e-18
Identity = 44/79 (55.70%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    4 EIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKA----GIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 228
            EI AA+K  S+  +KGILG+T++++VS+DF+ D+RSSI+D+KA     +   K+F K+VSWYDNEWGYS RVVDL+  M
Sbjct:  273 EIDAALKKASQTYMKGILGFTDEELVSSDFINDARSSIYDSKATLQNNLPGEKRFFKVVSWYDNEWGYSHRVVDLVRFM 351          
The following BLAST results are available for this feature:
BLAST of GO242080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
G3PC_SCEVA1.123e-2075.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_MESAU1.466e-2069.57Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_BUCAI1.466e-2059.74Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3PC_TRYBB2.501e-2061.04Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_CHLPN3.267e-2060.26Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P1_GLORO5.572e-2076.19Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragme... [more]
G3PG_TRYCR7.277e-2056.25Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3PG_TRYBB2.117e-1956.25Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P2_DROSU6.161e-1967.74Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragme... [more]
G3PG_CRIFA1.792e-1855.70Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]

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Properties
Property NameValue
Genbank description728 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 873 5, mRNA sequence.