GO242012

Overview
NameGO242012
Unique NameGO242012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242012 vs. ExPASy Swiss-Prot
Match: RL2_PECCP (50S ribosomal protein L2 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplB PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.973e-24
Identity = 67/186 (36.02%), Postives = 97/186 (52.15%), Query Frame = 2
Query:  161 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 718
            Q+R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + S CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGG
Sbjct:   61 QYRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGSYVTLRLRSGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGG 234          
BLAST of GO242012 vs. ExPASy Swiss-Prot
Match: RL2_THEPX (50S ribosomal protein L2 OS=Thermoanaerobacter sp. (strain X514) GN=rplB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.883e-24
Identity = 76/221 (34.39%), Postives = 113/221 (51.13%), Query Frame = 2
Query:   77 EMGRVIRAQRKGAGSVFKSHT-HHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 718
            E   V+   + G  +V+   T  HR G    ++R +DF      + G VA I +DP R A +A + +        +K   IA  G+  G  +  G+   + VGN LP+R+IP G ++ N+E   G  G L RA+G  A +++   + D  +V++PSG  ++I + CRA IGQV+        + KAG         R+ W    P VRG AMNPV+HPHGG
Sbjct:   30 EKSLVVTLTKTGGRNVYGRITVRHRGGGHKRKYRIIDFKRDKDGIPGKVAAIEYDPNRTAYIALIHYLDG-----EKRYIIAPYGLKVGDIIESGENVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMA--KEGDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAG---------RSRWLGIRPTVRGSAMNPVDHPHGG 234          
BLAST of GO242012 vs. ExPASy Swiss-Prot
Match: RL2_THEP3 (50S ribosomal protein L2 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.883e-24
Identity = 76/221 (34.39%), Postives = 113/221 (51.13%), Query Frame = 2
Query:   77 EMGRVIRAQRKGAGSVFKSHT-HHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 718
            E   V+   + G  +V+   T  HR G    ++R +DF      + G VA I +DP R A +A + +        +K   IA  G+  G  +  G+   + VGN LP+R+IP G ++ N+E   G  G L RA+G  A +++   + D  +V++PSG  ++I + CRA IGQV+        + KAG         R+ W    P VRG AMNPV+HPHGG
Sbjct:   30 EKSLVVTLTKTGGRNVYGRITVRHRGGGHKRKYRIIDFKRDKDGIPGKVAAIEYDPNRTAYIALIHYLDG-----EKRYIIAPYGLKVGDIIESGENVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMA--KEGDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAG---------RSRWLGIRPTVRGSAMNPVDHPHGG 234          
BLAST of GO242012 vs. ExPASy Swiss-Prot
Match: RL2_BORBZ (50S ribosomal protein L2 OS=Borrelia burgdorferi (strain ZS7) GN=rplB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.883e-24
Identity = 75/210 (35.71%), Postives = 114/210 (54.29%), Query Frame = 2
Query:   92 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 718
            I  +R+G G       H RK    +R +DF  R+ + +   VA I +DP R A +A + ++       +K   I+ +G+  G  +  G  A + +GN LP+ +IP G  V N+E +VG  G L R++G YA+I++   D +   VKL SG  ++I   C A IG++         + KAG +  ++  +R   PKVRGVAMNPV+HPHGG
Sbjct:   50 ISIRRRGGG-------HKRK----YRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDG-----EKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENIPIGRTVHNIELNVGKGGQLIRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANISIGKAGKS--RWLGRR---PKVRGVAMNPVDHPHGG 236          
BLAST of GO242012 vs. ExPASy Swiss-Prot
Match: RL2_BORBU (50S ribosomal protein L2 OS=Borrelia burgdorferi GN=rplB PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.883e-24
Identity = 75/210 (35.71%), Postives = 114/210 (54.29%), Query Frame = 2
Query:   92 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 718
            I  +R+G G       H RK    +R +DF  R+ + +   VA I +DP R A +A + ++       +K   I+ +G+  G  +  G  A + +GN LP+ +IP G  V N+E +VG  G L R++G YA+I++   D +   VKL SG  ++I   C A IG++         + KAG +  ++  +R   PKVRGVAMNPV+HPHGG
Sbjct:   50 ISIRRRGGG-------HKRK----YRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDG-----EKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENIPIGRTVHNIELNVGKGGQLIRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANISIGKAGKS--RWLGRR---PKVRGVAMNPVDHPHGG 236          
BLAST of GO242012 vs. ExPASy Swiss-Prot
Match: RL2_GEOLS (50S ribosomal protein L2 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.624e-24
Identity = 77/232 (33.19%), Postives = 121/232 (52.16%), Query Frame = 2
Query:   35 HQPAAQAQSL-SPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPA---QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 718
            HQ  +  + + S + E   +++ ++ G  + F   T   +G     ++R +DF      +   VA I +DP R A +A + +        +K   +A   +  G  V  G +A +  GN LP+RSIP G ++ N+E  +G    LAR++G +A ++S   +   ++VKLPSG  +++   C A IGQV         L KAG +  ++  KR   PKVRGVAMNPV+HPHGG
Sbjct:   15 HQTCSTFEEITSTTPEKSLLVKIKKTGGRNHFGRVTARHQGGGHKQKYRMIDFRRDKRGIPAKVATIEYDPNRSARIALLHYTDG-----EKRYILAPLDLKVGDTVLSGPEADIKPGNSLPLRSIPLGTIIHNIELKIGKGAQLARSAGTFAQLMS--KEGKYSQVKLPSGEVRLVLQDCYATIGQVGNIDHENVCLGKAGRS--RWLGKR---PKVRGVAMNPVDHPHGG 234          
BLAST of GO242012 vs. ExPASy Swiss-Prot
Match: RL2_PROMH (50S ribosomal protein L2 OS=Proteus mirabilis (strain HI4320) GN=rplB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.651e-24
Identity = 68/185 (36.76%), Postives = 95/185 (51.35%), Query Frame = 2
Query:  164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 718
            +R +DF      +   V  + +DP R A +A V +        ++   +A +G+  G  V  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + IPS CRA IG+V       + L KAG +       R   P VRG AMNPV+HPHGG
Sbjct:   62 YRIVDFKRNKDGIPATVERLEYDPNRSANIALVLYADG-----ERRYILAPKGLKAGDKVQSGVDAAIKTGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTIRLRSGEMRKIPSDCRATIGEVGNSEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGG 234          
BLAST of GO242012 vs. ExPASy Swiss-Prot
Match: RL2_LISW6 (50S ribosomal protein L2 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.651e-24
Identity = 75/226 (33.19%), Postives = 117/226 (51.77%), Query Frame = 2
Query:   47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 718
            A+  + +P K + R ++ ++ G  +  K    H  G    Q+R +DF      + G VA I +DP R A +A + +        +K   IAA+G+  GQ +Y G +A + +GN L ++ IP G VV N+E   G  G L R++G  A ++    +     ++L SG  ++I + CRA IGQV   +     + KAG +  ++  KR   P VRG  MNP +HPHGG
Sbjct:   22 AEITTSTPEKSLLRPLK-KKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKIGNALELKDIPVGTVVHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGQVGNEQHELINIGKAGRS--RWMGKR---PTVRGSVMNPNDHPHGG 234          
BLAST of GO242012 vs. ExPASy Swiss-Prot
Match: RL2_LISMO (50S ribosomal protein L2 OS=Listeria monocytogenes GN=rplB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.651e-24
Identity = 75/226 (33.19%), Postives = 117/226 (51.77%), Query Frame = 2
Query:   47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 718
            A+  + +P K + R ++ ++ G  +  K    H  G    Q+R +DF      + G VA I +DP R A +A + +        +K   IAA+G+  GQ +Y G +A + VGN L ++ IP G V+ N+E   G  G L R++G  A ++    +     ++L SG  ++I + CRA IGQV   +     + KAG +  ++  KR   P VRG  MNP +HPHGG
Sbjct:   22 AEITTSTPEKSLLRPLK-KKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGQVGNEQHELINIGKAGRS--RWMGKR---PTVRGSVMNPNDHPHGG 234          
BLAST of GO242012 vs. ExPASy Swiss-Prot
Match: RL2_LISMF (50S ribosomal protein L2 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rplB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.651e-24
Identity = 75/226 (33.19%), Postives = 117/226 (51.77%), Query Frame = 2
Query:   47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 718
            A+  + +P K + R ++ ++ G  +  K    H  G    Q+R +DF      + G VA I +DP R A +A + +        +K   IAA+G+  GQ +Y G +A + VGN L ++ IP G V+ N+E   G  G L R++G  A ++    +     ++L SG  ++I + CRA IGQV   +     + KAG +  ++  KR   P VRG  MNP +HPHGG
Sbjct:   22 AEITTSTPEKSLLRPLK-KKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGQVGNEQHELINIGKAGRS--RWMGKR---PTVRGSVMNPNDHPHGG 234          
The following BLAST results are available for this feature:
BLAST of GO242012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_PECCP2.973e-2436.0250S ribosomal protein L2 OS=Pectobacterium carotov... [more]
RL2_THEPX3.883e-2434.3950S ribosomal protein L2 OS=Thermoanaerobacter sp.... [more]
RL2_THEP33.883e-2434.3950S ribosomal protein L2 OS=Thermoanaerobacter pse... [more]
RL2_BORBZ3.883e-2435.7150S ribosomal protein L2 OS=Borrelia burgdorferi (... [more]
RL2_BORBU3.883e-2435.7150S ribosomal protein L2 OS=Borrelia burgdorferi G... [more]
RL2_GEOLS6.624e-2433.1950S ribosomal protein L2 OS=Geobacter lovleyi (str... [more]
RL2_PROMH8.651e-2436.7650S ribosomal protein L2 OS=Proteus mirabilis (str... [more]
RL2_LISW68.651e-2433.1950S ribosomal protein L2 OS=Listeria welshimeri se... [more]
RL2_LISMO8.651e-2433.1950S ribosomal protein L2 OS=Listeria monocytogenes... [more]
RL2_LISMF8.651e-2433.1950S ribosomal protein L2 OS=Listeria monocytogenes... [more]

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Properties
Property NameValue
Genbank description660 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 803 5, mRNA sequence.