GO242012

Overview
NameGO242012
Unique NameGO242012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242012 vs. ExPASy Swiss-Prot
Match: RL2_LISMC (50S ribosomal protein L2 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.651e-24
Identity = 75/226 (33.19%), Postives = 117/226 (51.77%), Query Frame = 2
Query:   47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 718
            A+  + +P K + R ++ ++ G  +  K    H  G    Q+R +DF      + G VA I +DP R A +A + +        +K   IAA+G+  GQ +Y G +A + VGN L ++ IP G V+ N+E   G  G L R++G  A ++    +     ++L SG  ++I + CRA IGQV   +     + KAG +  ++  KR   P VRG  MNP +HPHGG
Sbjct:   22 AEITTSTPEKSLLRPLK-KKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGQVGNEQHELINIGKAGRS--RWMGKR---PTVRGSVMNPNDHPHGG 234          
BLAST of GO242012 vs. ExPASy Swiss-Prot
Match: RL2_LISIN (50S ribosomal protein L2 OS=Listeria innocua GN=rplB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.651e-24
Identity = 75/226 (33.19%), Postives = 117/226 (51.77%), Query Frame = 2
Query:   47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 718
            A+  + +P K + R ++ ++ G  +  K    H  G    Q+R +DF      + G VA I +DP R A +A + +        +K   IAA+G+  GQ +Y G +A + VGN L ++ IP G V+ N+E   G  G L R++G  A ++    +     ++L SG  ++I + CRA IGQV   +     + KAG +  ++  KR   P VRG  MNP +HPHGG
Sbjct:   22 AEITTSTPEKSLLRPLK-KKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGQVGNEQHELINIGKAGRS--RWMGKR---PTVRGSVMNPNDHPHGG 234          
BLAST of GO242012 vs. ExPASy Swiss-Prot
Match: RL2_BUCBP (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rplB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.651e-24
Identity = 73/224 (32.59%), Postives = 112/224 (50.00%), Query Frame = 2
Query:   59 SLSPSKEMGRVIRAQRKGAG--SVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 718
            SL   K +  +IR   K  G  +  +  T H  G  +  +R +DF      +  +V  + +DP R + +A + +    R        +A++G+  G  +  G  A + +GN LP+++IP G V+ NVE   G  G +AR++G Y  +IS   +N    ++L SG  + + S CRA IG+V       + L KAG +       R   P VRG AMNPV+HPHGG
Sbjct:   23 SLYKGKPISSLIRKNSKSGGRNNCGRITTRHIGGRHKRFYRIIDFKRNKDNIPAIVERLEYDPNRSSNIALILYSDGDR-----RYILASKGLMVGSKIVSGFNAEIKIGNALPMKNIPIGTVIHNVEIKPGKGGQIARSAGTYVQLISR--ENSYVTIRLRSGETRKLESKCRATIGEVGNSESMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDHPHGG 234          
BLAST of GO242012 vs. ExPASy Swiss-Prot
Match: RL2_WOLWR (50S ribosomal protein L2 OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=rplB PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.476e-23
Identity = 75/200 (37.50%), Postives = 107/200 (53.50%), Query Frame = 2
Query:  137 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 718
            T HR G    ++R +DF +RN   +G+V +I +DP R   LA ++++        K   +A +GM  G  V  G  A ++ GN L ++ IP G+ V NVE   G+   +ARA+G YA I+    D     ++L SG  ++I S C+A IG V+      + L KAG         R+ W    P VRGVAMNPV+HPHGG
Sbjct:   51 TRHRGGGHKKKYRVIDF-KRNRSGQGIVEKIEYDPNRSGFLALISYKED----DIKSYILAPQGMKPGDVVTAGNDADILPGNCLLLKHIPVGSFVHNVELKPGNGAAIARAAGCYAQIVGR--DGQYVLLRLRSGQIRLILSSCKATIGVVSNPDHKNRKLGKAG---------RSRWLGIRPTVRGVAMNPVDHPHGG 234          
BLAST of GO242012 vs. ExPASy Swiss-Prot
Match: RL2_THETN (50S ribosomal protein L2 OS=Thermoanaerobacter tengcongensis GN=rplB PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.476e-23
Identity = 72/198 (36.36%), Postives = 103/198 (52.02%), Query Frame = 2
Query:  143 HRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 718
            HR G    ++R +DF      + G VA I +DP R A +A + +        +K   IA  G+  G  V  G+   + VGN LP+R+IP G +V N+E   G  G L RA+G  A +++   + D   +++PSG  ++I + CRA IGQV+        + KAG         R+ W    P VRG AMNPV+HPHGG
Sbjct:   53 HRGGGHKRRYRIIDFKRDKDGIPGKVAAIEYDPNRTAFIALIHYADG-----EKRYIIAPHGLKVGDIVESGENVDIKVGNALPLRNIPVGTIVHNIELIPGKGGQLVRAAGAAAQLMA--KEGDYVHIRMPSGEIRLINANCRATIGQVSNIDHENVKIGKAG---------RSRWLGIRPTVRGSAMNPVDHPHGG 234          
BLAST of GO242012 vs. ExPASy Swiss-Prot
Match: RL2_MYCS5 (50S ribosomal protein L2 OS=Mycoplasma synoviae (strain 53) GN=rplB PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.476e-23
Identity = 74/219 (33.79%), Postives = 109/219 (49.77%), Query Frame = 2
Query:   68 PSKEMGRVIR--AQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 718
            P+K + R+++  A R   G +   H H  +    +R +DF      +  VV  I +DP R A +  + +        +K   IA +G+  GQ V  G+ A ++VGN LP+ +IPEG  + N+E   G    LAR++G  A I+  + +     VKL SG  + I + CRA +G V     +   + KAG   H     R   P VRG  MNPV+HPHGG
Sbjct:   30 PTKSLLRILKNSAGRNNQGKITVRH-HGGRVKRFYRLVDFKRNKDNIPAVVKTIEYDPNRSANICLLAYADG-----EKRYIIAPKGIKVGQKVVSGEGADIIVGNSLPLSNIPEGTFIHNIEMQPGGGAKLARSAGTSAQILGKDDNGKYVVVKLKSGETRRILARCRATVGMVGNEEYSLVNVGKAGINRH-----RGIRPTVRGSVMNPVDHPHGG 237          
BLAST of GO242012 vs. ExPASy Swiss-Prot
Match: RL2_ERWCT (50S ribosomal protein L2 OS=Erwinia carotovora subsp. atroseptica GN=rplB PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.476e-23
Identity = 66/185 (35.68%), Postives = 96/185 (51.89%), Query Frame = 2
Query:  164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 718
            +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + S CRA +G+V       + L KAG A       R   P VRG AMNPV+HPHGG
Sbjct:   62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGSYVTLRLRSGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAARW-----RGIRPTVRGTAMNPVDHPHGG 234          
BLAST of GO242012 vs. ExPASy Swiss-Prot
Match: RL2_WOLTR (50S ribosomal protein L2 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=rplB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.927e-23
Identity = 77/213 (36.15%), Postives = 112/213 (52.58%), Query Frame = 2
Query:   92 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 718
            I  + KG G        H+K   ++R +DF +RN   +GVV +I +DP R   LA V+++        K   +A +G+  G  V  G    ++ GN LP++ IP G+ V  VE   G   V+ARA+G YA ++    D +   ++L SG  +++ S C+A IG V+   R  + L KAG         R+ W    P VRGVAMNPV+HPHGG
Sbjct:   49 ITIRHKGGG--------HKK---KYRIIDF-KRNRNDQGVVEKIEYDPNRSGFLALVSYKCD----DTKSYILAPQGIKPGDIVMSGSGIDILPGNCLPLKGIPIGSFVHGVELKPGSGAVIARAAGCYAQVVGR--DGNYVLLRLRSGQVRLVLSSCKATIGVVSNPDRKNRKLGKAG---------RSRWLGVRPTVRGVAMNPVDHPHGG 234          
BLAST of GO242012 vs. ExPASy Swiss-Prot
Match: RL2_WOLPP (50S ribosomal protein L2 OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=rplB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.927e-23
Identity = 75/200 (37.50%), Postives = 107/200 (53.50%), Query Frame = 2
Query:  137 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 718
            T HR G    ++R +DF +RN   +G+V +I +DP R   LA ++++        K   +A +GM  G  V  G  A ++ GN L ++ IP G+ V NVE   G+   +ARA+G YA I+    D     ++L SG  ++I S C+A IG V+      + L KAG         R+ W    P VRGVAMNPV+HPHGG
Sbjct:   51 TRHRGGGHKKKYRVIDF-KRNRSDQGIVEKIEYDPNRSGFLALISYKED----DTKSYILAPQGMKPGDVVTAGDDADILPGNCLLLKHIPVGSFVHNVELKPGNGAAIARAAGCYAQIVGR--DGQYVLLRLRSGQIRLILSSCKATIGVVSNLDHKNRKLGKAG---------RSRWLGIRPAVRGVAMNPVDHPHGG 234          
BLAST of GO242012 vs. ExPASy Swiss-Prot
Match: RL2_WOLPM (50S ribosomal protein L2 OS=Wolbachia pipientis wMel GN=rplB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.927e-23
Identity = 74/200 (37.00%), Postives = 107/200 (53.50%), Query Frame = 2
Query:  137 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGRRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 718
            T HR G    ++R +DF +RN   +G+V +I +DP R   LA ++++        K   +A +GM  G  V  G  A ++ GN L ++ IP G+ V NVE   G+   +ARA+G YA I+    D     ++L SG  ++I S C+A IG V+      + L KAG         R+ W    P VRG+AMNPV+HPHGG
Sbjct:   51 TRHRGGGHKKKYRVIDF-KRNRSGQGIVEKIEYDPNRSGFLALISYKED----DIKSYILAPQGMKPGDVVTAGNDADILPGNCLLLKHIPVGSFVHNVELKPGNGAAIARAAGCYAQIVGR--DGQYVLLRLRSGQIRLILSSCKATIGVVSNPDHKNRKLGKAG---------RSRWLGIRPTVRGIAMNPVDHPHGG 234          
The following BLAST results are available for this feature:
BLAST of GO242012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_LISMC8.651e-2433.1950S ribosomal protein L2 OS=Listeria monocytogenes... [more]
RL2_LISIN8.651e-2433.1950S ribosomal protein L2 OS=Listeria innocua GN=rp... [more]
RL2_BUCBP8.651e-2432.5950S ribosomal protein L2 OS=Buchnera aphidicola su... [more]
RL2_WOLWR1.476e-2337.5050S ribosomal protein L2 OS=Wolbachia sp. subsp. D... [more]
RL2_THETN1.476e-2336.3650S ribosomal protein L2 OS=Thermoanaerobacter ten... [more]
RL2_MYCS51.476e-2333.7950S ribosomal protein L2 OS=Mycoplasma synoviae (s... [more]
RL2_ERWCT1.476e-2335.6850S ribosomal protein L2 OS=Erwinia carotovora sub... [more]
RL2_WOLTR1.927e-2336.1550S ribosomal protein L2 OS=Wolbachia sp. subsp. B... [more]
RL2_WOLPP1.927e-2337.5050S ribosomal protein L2 OS=Wolbachia pipientis su... [more]
RL2_WOLPM1.927e-2337.0050S ribosomal protein L2 OS=Wolbachia pipientis wM... [more]

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Properties
Property NameValue
Genbank description660 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 803 5, mRNA sequence.