GO241928

Overview
NameGO241928
Unique NameGO241928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241928 vs. ExPASy Swiss-Prot
Match: AROE_HALLT (Shikimate dehydrogenase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=aroE PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 50/122 (40.98%), Postives = 67/122 (54.92%), Query Frame = 2
Query:  116 GARVIIFNRNYERAKALADAVSGEALH-FEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFM 478
            GA V + NR  ERA  LADAV G      + L +       +L NA+++GM+   + +PVP + L     V DAVY P  TRLLREAA  GAT + G  M + Q +  F ++TG  AP + M
Sbjct:  146 GATVHVANRTAERAVDLADAVPGATGGGLDDLGDRIAGAD-VLVNATSVGMD-EPEATPVPADHLHGDLAVLDAVYAPIETRLLREAAAAGATTIDGAWMLLFQGVEAFEIWTGADAPVEAM 265          
BLAST of GO241928 vs. ExPASy Swiss-Prot
Match: AROE_METKA (Shikimate dehydrogenase OS=Methanopyrus kandleri GN=aroE PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12
Identity = 49/138 (35.51%), Postives = 70/138 (50.72%), Query Frame = 2
Query:  125 VIIFNRNYERAKALAD-------------AVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSP-VPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE 496
            ++I NR  +RA+ LA+              + G+ +  E           +L +A+ +GM PN D+ P V  + +    +V D VY P  TRLL EA + GAT VSGV M + Q    F L+TG  AP + MR+ VLE
Sbjct:  156 IVIANRTVDRAERLAEELKEKVGVKARAIGLDGDEIEREL------RDADLLVDATPVGMYPNEDEPPLVTADQMHEDLIVNDLVYNPPRTRLLEEAEKAGATPVSGVGMLVYQGALAFELWTGEEAPVEVMREAVLE 287          
BLAST of GO241928 vs. ExPASy Swiss-Prot
Match: AROE_ARCFU (Shikimate dehydrogenase OS=Archaeoglobus fulgidus GN=aroE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 2
Query:  116 GARVIIFNRNYERAKALADAVS--GEALHFEYLH-EFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVL 493
            G+ VI+ NR  E+ +   + +   GE + +     E    K  ++ NA+ +GM     + PVP   L   ELVFD VY P  T L+REA + G  VV G+EM + Q    F ++TG       MR+  L
Sbjct:  136 GSTVIVANRTEEKGREAVEMLRRYGECIFWPLSRVEELKGKVDVVVNATPLGMRGFKAEIPVPPSMLDGVELVFDTVYNPMETPLIREAKKRGCKVVYGIEMLVHQGAKAFEIWTGIEPDVGVMREAAL 264          
BLAST of GO241928 vs. ExPASy Swiss-Prot
Match: AROE_PYRAB (Shikimate dehydrogenase OS=Pyrococcus abyssi GN=aroE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 46/131 (35.11%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  110 SRGARVIIFNRNYERAKALAD-AVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 499
            S+ A +++ NR   +AK+L    V G +L     +  + +   +L NA+++GM  N  +S VP+  L+   +V D VY P  TRLLR+A  VG  V+ G+ M I Q    F+L+TG     + MR++ LE+
Sbjct:  135 SKIANIVVLNRTPSKAKSLEKFGVKGGSLDELPNYVGWAD---VLINATSVGMGTN--ESLVPRRLLRRELIVMDIVYKPLKTRLLRDAESVGCRVIDGLWMLIYQGAESFKLWTGIYPDVELMRRVSLER 260          
BLAST of GO241928 vs. ExPASy Swiss-Prot
Match: AROE_BACHD (Shikimate dehydrogenase OS=Bacillus halodurans GN=aroE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 35/92 (38.04%), Postives = 51/92 (55.43%), Query Frame = 2
Query:  224 EKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 499
            E+  ++ N +++GM P  D  P+  E L    +V D +Y P  T+ LREA + GA  V G+ MF+ Q    F L+TG     + MR+ VLEQ
Sbjct:  184 ERFSVIINTTSVGMSPRVDDMPLSLERLSRETVVSDLIYNPLETKFLREAKQKGAKTVDGLGMFVNQGALAFELWTGLRPDREKMRRCVLEQ 275          
BLAST of GO241928 vs. ExPASy Swiss-Prot
Match: AROE_HALSA (Shikimate dehydrogenase OS=Halobacterium salinarium GN=aroE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 49/122 (40.16%), Postives = 63/122 (51.64%), Query Frame = 2
Query:  116 GARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMR 481
            GA V I NR    A  LA  V G A+    L     +   +L +A+ +GM+ + D SPV  +AL     V DAVY+P  TRLLR+AA  GAT + G  M + Q    F  +TG  AP   MR
Sbjct:  140 GATVRIANRTRAAADELAADVGGTAVGLGDLPRSLAD-ATVLVHATTVGMD-DPDTSPVSADALHDDLAVLDAVYSPVETRLLRDAAAAGATTIDGAWMLLYQGAEAFERWTGLDAPVAAMR 259          
BLAST of GO241928 vs. ExPASy Swiss-Prot
Match: AROE_HALS3 (Shikimate dehydrogenase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=aroE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 49/122 (40.16%), Postives = 63/122 (51.64%), Query Frame = 2
Query:  116 GARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMR 481
            GA V I NR    A  LA  V G A+    L     +   +L +A+ +GM+ + D SPV  +AL     V DAVY+P  TRLLR+AA  GAT + G  M + Q    F  +TG  AP   MR
Sbjct:  140 GATVRIANRTRAAADELAADVGGTAVGLGDLPRSLAD-ATVLVHATTVGMD-DPDTSPVSADALHDDLAVLDAVYSPVETRLLRDAAAAGATTIDGAWMLLYQGAEAFERWTGLDAPVAAMR 259          
BLAST of GO241928 vs. ExPASy Swiss-Prot
Match: AROE_NITMS (Shikimate dehydrogenase OS=Nitrosopumilus maritimus (strain SCM1) GN=aroE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 42/137 (30.66%), Postives = 75/137 (54.74%), Query Frame = 2
Query:  107 KSRGARVIIFNRNYERAKALAD-----AVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 502
            K +   + I NR  E+A  L +     ++   A+  + + E   +  +I+ NA++IG++  ++ SP+  E +    +V+D VY P NT  L++A E  AT++ G EM + QA+  F ++ G  AP + M+K +L  F
Sbjct:  140 KEKAKSITIANRTIEKANNLVEFAKKISLDANAITIDQVGESAKDYNIIV-NATSIGLQ--NESSPISFEGVNEKTVVYDIVYLPMNTDFLKKAKEKNATIIFGYEMLLGQAVRAFEIWHGMEAPYNAMKKALLGGF 273          
BLAST of GO241928 vs. ExPASy Swiss-Prot
Match: AROE_MOOTA (Shikimate dehydrogenase OS=Moorella thermoacetica (strain ATCC 39073) GN=aroE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 39/131 (29.77%), Postives = 68/131 (51.91%), Query Frame = 2
Query:  125 VIIFNRNYERAKALADAVSGEALHFEYLHEFFP-------EKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE 496
            +++ NR  ERA  LA A++G  L    ++           E   ++ N +++GM P  +++P+P +  +  + V+D VY P  T+ L  A   G  V+SG++M + Q    F L+TG  AP   M +++ E
Sbjct:  152 LVLANRTPERATELAGALAGAGLPAPVVYRLGDAGMRSEVEAADLVLNTTSLGMWPRVEETPLPPDWFRPGQWVYDLVYNPLETKFLAGARRRGCRVISGLDMLLYQGAAAFTLWTGREAPVAVMDRVLRE 282          
BLAST of GO241928 vs. ExPASy Swiss-Prot
Match: AROE_METJA (Shikimate dehydrogenase OS=Methanocaldococcus jannaschii GN=aroE PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 45/133 (33.83%), Postives = 72/133 (54.14%), Query Frame = 2
Query:  125 VIIFNRNYERAKALADAVS-------GEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPK-EALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 499
            +II NR  E+A+ALA  ++       GE + F  L        +I+ NA+ IGM PN D  P+ K E L+   +V D +Y P  T LL+EA +V A  ++G+ M I Q    F+++TG     + M+  ++++
Sbjct:  148 IIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIII-NATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLETVLLKEAKKVNAKTINGLGMLIYQGAVAFKIWTGVEPNIEVMKNAIIDK 279          
The following BLAST results are available for this feature:
BLAST of GO241928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
AROE_HALLT8.723e-1340.98Shikimate dehydrogenase OS=Halorubrum lacusprofund... [more]
AROE_METKA3.315e-1235.51Shikimate dehydrogenase OS=Methanopyrus kandleri G... [more]
AROE_ARCFU1.645e-1134.11Shikimate dehydrogenase OS=Archaeoglobus fulgidus ... [more]
AROE_PYRAB2.149e-1135.11Shikimate dehydrogenase OS=Pyrococcus abyssi GN=ar... [more]
AROE_BACHD2.149e-1138.04Shikimate dehydrogenase OS=Bacillus halodurans GN=... [more]
AROE_HALSA2.806e-1140.16Shikimate dehydrogenase OS=Halobacterium salinariu... [more]
AROE_HALS32.806e-1140.16Shikimate dehydrogenase OS=Halobacterium salinarum... [more]
AROE_NITMS4.787e-1130.66Shikimate dehydrogenase OS=Nitrosopumilus maritimu... [more]
AROE_MOOTA6.252e-1129.77Shikimate dehydrogenase OS=Moorella thermoacetica ... [more]
AROE_METJA6.252e-1133.83Shikimate dehydrogenase OS=Methanocaldococcus jann... [more]

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Properties
Property NameValue
Genbank description576 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 718 5, mRNA sequence.