GO241928

Overview
NameGO241928
Unique NameGO241928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13782 contig Csv1_Contig13782:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of GO241928 vs. ExPASy Swiss-Prot
Match: AROE_DESAD (Shikimate dehydrogenase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=aroE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 42/126 (33.33%), Postives = 69/126 (54.76%), Query Frame = 2 
Query:  125 VIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQ-SPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 499
            + I NR   +A  LA      AL ++   +   +   ++ N++++GM    ++ +P+  E      ++FD VY P  T L+R+A   G TV+ G+EMF+ Q L QFRL+TG    E   R+L+LE+
Sbjct:  149 IFITNRTKSKADDLAAEFKISALDWDARGDQHLD---LIVNSTSLGMSGKFEEINPMIMENQDKNTIIFDLVYNPLETVLIRKAKSKGCTVIHGIEMFVHQGLEQFRLWTGIKLDEKKARELLLEK 271
The following BLAST results are available for this feature:
BLAST of GO241928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
AROE_DESAD8.165e-1133.33Shikimate dehydrogenase OS=Desulfovibrio salexigen... [more]

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Properties
Property NameValue
Genbank description576 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 718 5, mRNA sequence.