GO241919

Overview
NameGO241919
Unique NameGO241919
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL25_YEAST (60S ribosomal protein L25 OS=Saccharomyces cerevisiae GN=RPL25 PE=1 SV=4)

HSP 1 Score: 153.68 bits (387), Expect = 7.499e-37
Identity = 74/122 (60.66%), Postives = 96/122 (78.69%), Query Frame = 1
Query:  133 KKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 498
            KKA K+RTS TF  PKTLK  R PKY   + P  N+LD Y++++ P+T+E+AMKK+ED N LVF V ++A+K +IK AVK++YE+   KVNTL+RP+GTKKAYVRLT DYDALD+AN+IG I
Sbjct:   21 KKALKVRTSATFRLPKTLKLARAPKYASKAVPHYNRLDSYKVIEQPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRIGYI 142          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: R23A1_CAEEL (60S ribosomal protein L23a 1 OS=Caenorhabditis elegans GN=rpl-25.1 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.499e-37
Identity = 77/119 (64.71%), Postives = 96/119 (80.67%), Query Frame = 1
Query:  142 KKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 498
            +++RTSV F RP TLK  R  ++PR SAP  +K+DH++I+++PLTTESAMKKIE++NTLVFIV   A+K +IKDAV K+Y +Q  KVNTLI P   KKAYVRLT DYDALDVANKIG+I
Sbjct:   29 RQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQHPLTTESAMKKIEEHNTLVFIVSNDANKYQIKDAVHKLYNVQALKVNTLITPLQQKKAYVRLTADYDALDVANKIGVI 147          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL25_PICJA (60S ribosomal protein L25 OS=Pichia jadinii GN=RPL25 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.279e-36
Identity = 75/121 (61.98%), Postives = 94/121 (77.69%), Query Frame = 1
Query:  136 KAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 498
            KA K+RTS TF  PKTLK  R PKY R + P   +LD+Y+++  P+ +E+AMKK+ED NTLVF VDI+A+K +IK AVK +YE+    VNTLIRP+GTKKAYVRLT D+DALD+ANKIG I
Sbjct:   22 KALKVRTSTTFRLPKTLKLTRAPKYARKAVPHYQRLDNYKVIVAPIASETAMKKVEDGNTLVFQVDIKANKHQIKQAVKDLYEVDVLAVNTLIRPNGTKKAYVRLTADHDALDIANKIGYI 142          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL25_KLULA (60S ribosomal protein L25 OS=Kluyveromyces lactis GN=RPL25 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.671e-36
Identity = 72/122 (59.02%), Postives = 97/122 (79.51%), Query Frame = 1
Query:  133 KKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 498
            KKA K+RTS +F  PKTLK  R+PKY   + P  N+LD Y++++ P+T+E+AMKK+ED NTLVF V ++A+K +IK AVK++YE+    VNTL+RP+GTKKAYVRLT D+DALD+AN+IG I
Sbjct:   21 KKALKVRTSASFRLPKTLKLARSPKYATKAVPHYNRLDSYKVIEQPITSETAMKKVEDGNTLVFKVSLKANKYQIKKAVKELYEVDVLSVNTLVRPNGTKKAYVRLTADFDALDIANRIGYI 142          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL25B_SCHPO (60S ribosomal protein L25-B OS=Schizosaccharomyces pombe GN=rpl25b PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.414e-35
Identity = 73/122 (59.84%), Postives = 96/122 (78.69%), Query Frame = 1
Query:  133 KKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 498
            K A+K+RTS TF RPKTL+  R PKY R S P  ++LD Y+I+  P+ +ESAMKKIED+NTLVF V ++A+K  IK+AVKK+Y +   K+NTLIRP+GTKKA+V+L+ D DALDVAN+IG +
Sbjct:   20 KVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKIIVNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVKLSADADALDVANRIGFL 141          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL25A_SCHPO (60S ribosomal protein L25-A OS=Schizosaccharomyces pombe GN=rpl25a PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.167e-35
Identity = 72/122 (59.02%), Postives = 95/122 (77.87%), Query Frame = 1
Query:  133 KKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 498
            K AKK+RTS TF RPKTL+  R PKY R S     +LD Y+I+  P+ +ESAMKKIED+NTLVF V ++A+K  IK+AV+K+Y ++  K+NTLIRP+GTKKA+V+L+ D DALDVAN+IG +
Sbjct:   20 KVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKIIVNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVKLSADADALDVANRIGFL 141          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: R23A2_CAEEL (60S ribosomal protein L23a 2 OS=Caenorhabditis elegans GN=rpl-25.2 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.667e-34
Identity = 76/119 (63.87%), Postives = 89/119 (74.79%), Query Frame = 1
Query:  142 KKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 498
            K +RTSV F RPKTL   R P+Y R SAP R+KLD + ++K P TTES+MKKIED+NTLVFIVD +A+K  IK AV  +Y ++  KVNTLI P   KKAYVRL  DYDALDVANKIG I
Sbjct:   28 KNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVIKAPHTTESSMKKIEDHNTLVFIVDEKANKHHIKRAVHALYNVKAVKVNTLITPLQQKKAYVRLASDYDALDVANKIGFI 146          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL23A_DICDI (60S ribosomal protein L23a OS=Dictyostelium discoideum GN=rpl23a PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.464e-32
Identity = 67/122 (54.92%), Postives = 91/122 (74.59%), Query Frame = 1
Query:  133 KKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 498
            K  +K+RTSV F RP TL   + P YPR S     K+D ++ILK PLTTESA +KIE +NT+ F+VD+ A+K ++ DAV KMY+++ K+VNTLI P G KKA+V L+P+++A DVANKIG+I
Sbjct:   48 KSTRKVRTSVIFRRPVTLNNPKKPAYPRRSVNKITKMDQFRILKAPLTTESATQKIEGSNTITFMVDMFANKSQVADAVAKMYDVKVKRVNTLITPRGEKKAFVTLSPEFEAADVANKIGLI 169          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL23A_TRYBB (60S ribosomal protein L23a OS=Trypanosoma brucei brucei GN=RPL23A PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.605e-31
Identity = 65/123 (52.85%), Postives = 89/123 (72.36%), Query Frame = 1
Query:  130 KKKAKKMRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 498
            K   +K  T   F RP T ++    K     +  +NK D ++I++YPLTT+ AMKKIE+NNTL FIVD RA+K +IK A++K+Y+++T KVNTLIRPDG KKAY+RL+  YDALD ANK+G++
Sbjct:   42 KVTKRKAYTRPQFRRPHTYRRPATVKPSSNVSAIKNKWDAFRIIRYPLTTDKAMKKIEENNTLTFIVDSRANKTEIKKAIRKLYQVKTVKVNTLIRPDGLKKAYIRLSASYDALDTANKMGLV 164          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RK23_SPIOL (50S ribosomal protein L23, chloroplastic OS=Spinacia oleracea GN=RPL23 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.956e-25
Identity = 57/111 (51.35%), Postives = 79/111 (71.17%), Query Frame = 1
Query:  172 RPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII*G 504
            +PKT KK +  KYPR        LD YQIL+ P+ TE+A+K I D N+L+F VD+RADK+ I++A+   + ++ +KVNTLIRPDGTKKAY+ L  +Y+A ++A KIGI  G
Sbjct:   92 QPKTSKKAKKLKYPR------RILDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGIFPG 196          
The following BLAST results are available for this feature:
BLAST of GO241919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RL25_YEAST7.499e-3760.6660S ribosomal protein L25 OS=Saccharomyces cerevis... [more]
R23A1_CAEEL7.499e-3764.7160S ribosomal protein L23a 1 OS=Caenorhabditis ele... [more]
RL25_PICJA1.279e-3661.9860S ribosomal protein L25 OS=Pichia jadinii GN=RPL... [more]
RL25_KLULA1.671e-3659.0260S ribosomal protein L25 OS=Kluyveromyces lactis ... [more]
RL25B_SCHPO1.414e-3559.8460S ribosomal protein L25-B OS=Schizosaccharomyces... [more]
RL25A_SCHPO9.167e-3559.0260S ribosomal protein L25-A OS=Schizosaccharomyces... [more]
R23A2_CAEEL2.667e-3463.8760S ribosomal protein L23a 2 OS=Caenorhabditis ele... [more]
RL23A_DICDI1.464e-3254.9260S ribosomal protein L23a OS=Dictyostelium discoi... [more]
RL23A_TRYBB3.605e-3152.8560S ribosomal protein L23a OS=Trypanosoma brucei b... [more]
RK23_SPIOL2.956e-2551.3550S ribosomal protein L23, chloroplastic OS=Spinac... [more]

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Properties
Property NameValue
Genbank description567 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 709 5, mRNA sequence.