GO241919

Overview
NameGO241919
Unique NameGO241919
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL23_SULAC (50S ribosomal protein L23P OS=Sulfolobus acidocaldarius GN=rpl23p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.178e-15
Identity = 39/81 (48.15%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  256 ILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 498
            I+K  L TE A+K IE  NTL  IV+    K+ IK+ V+K++ ++ +K+NTLI P G KKAYV+L  +Y A DVA+K+G++
Sbjct:    2 IIKEFLATEKAVKLIESQNTLTIIVNRNTTKKDIKNEVEKLFSVKVEKINTLITPKGEKKAYVKLKQEYKASDVAHKLGML 82          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL23_METVS (50S ribosomal protein L23P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl23p PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.376e-14
Identity = 36/85 (42.35%), Postives = 58/85 (68.24%), Query Frame = 1
Query:  241 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 495
            +D + ++K P+ +E  MK IE+ N LVF V+ +A K  IK+A+K+++  +  +VNT I P G KKAY++L  +Y+A +VA  +GI
Sbjct:    1 MDAFDVIKTPIVSEKTMKLIEEENRLVFYVERKATKEDIKEAIKQLFNAEVAEVNTNITPKGQKKAYIKLKDEYNAGEVAASLGI 85          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL23_SULSO (50S ribosomal protein L23P OS=Sulfolobus solfataricus GN=rpl23p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.920e-14
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  256 ILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 495
            +++  L TE A+K IE  NTL  IVD    K  IK +V++++ ++  KVN +I P G KKAYV+L P+Y A D+A+K+GI
Sbjct:    1 MIQMALATEKALKLIESYNTLTLIVDKSDTKDDIKKSVERLFNVKVVKVNVVITPQGYKKAYVKLAPEYKASDIAHKLGI 80          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL23_STAMF (50S ribosomal protein L23P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl23p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.920e-14
Identity = 37/83 (44.58%), Postives = 58/83 (69.88%), Query Frame = 1
Query:  250 YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 498
            Y+I+  P+ +E A+  I+  NTL FIVD  A K+ IKDAV+ ++ ++  KV TLI   G KKAYV+L P++ A ++A+++G+I
Sbjct:    9 YKIIIRPVHSEKALNLIDKENTLTFIVDRNASKKDIKDAVELVFGVKVLKVRTLITSRGEKKAYVKLAPEHRASEIASQLGLI 91          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL23_SULTO (50S ribosomal protein L23P OS=Sulfolobus tokodaii GN=rpl23p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.165e-13
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  256 ILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 498
            I+K  LTTE A+K IE  NTL  IV+  A K  IK  ++KM+ ++  KVNTLI   G KKAYV+L  +++A D+A+++GI+
Sbjct:    2 IIKEFLTTEKAIKLIESQNTLTVIVNKEATKADIKREIEKMFNVKVDKVNTLITIRGEKKAYVKLKKEFNASDIAHRLGIL 82          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL23_AERPE (50S ribosomal protein L23P OS=Aeropyrum pernix GN=rpl23p PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.165e-13
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 1
Query:  277 TESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 498
            TE   + +E+ NTL FIV   A K  +K AV++++ ++ +KV TLI P G KKAYV+L P+Y ALDVA K+G +
Sbjct:   13 TEKTTRMLEEENTLTFIVRREATKNDVKRAVEQLFGVKVEKVRTLITPRGYKKAYVKLAPEYKALDVATKLGAV 86          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL23_METM7 (50S ribosomal protein L23P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl23p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.595e-13
Identity = 34/85 (40.00%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  241 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 495
            +D + ++K P+ +E  MK IE+ N LVF V+ +A K  I+ A+K++++ +   +NT I P G KKAY+ L  +Y+A +VA  +GI
Sbjct:    1 MDAFDVIKTPIVSEKTMKLIEEENRLVFYVERKATKADIRAAIKELFDAEVADINTSITPKGKKKAYITLKSEYNAGEVAASLGI 85          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL23_METM5 (50S ribosomal protein L23P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl23p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.595e-13
Identity = 34/85 (40.00%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  241 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 495
            +D + ++K P+ +E  MK IE+ N LVF V+ +A K  I+ A+K++++ +   +NT I P G KKAY+ L  +Y+A +VA  +GI
Sbjct:    1 MDAFDVIKTPIVSEKTMKLIEEENRLVFYVERKATKADIRAAIKELFDAEVADINTSITPKGKKKAYITLKAEYNAGEVAASLGI 85          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL23_PYRAE (50S ribosomal protein L23P OS=Pyrobaculum aerophilum GN=rpl23p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.390e-13
Identity = 33/81 (40.74%), Postives = 58/81 (71.60%), Query Frame = 1
Query:  256 ILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 498
            ++K  + TE A++  E  N +  IVD  A K++I + V+++Y ++ +KVNTLI P G KKAYV+LT +++A+D+ +K+G++
Sbjct:    1 MIKRIVVTEKALRLAEKENKITLIVDRGATKKQIAEEVERLYNVKVEKVNTLITPRGEKKAYVKLTKEHNAMDLLSKLGVL 81          
BLAST of GO241919 vs. ExPASy Swiss-Prot
Match: RL23_METMP (50S ribosomal protein L23P OS=Methanococcus maripaludis GN=rpl23p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.390e-13
Identity = 33/85 (38.82%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  241 LDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 495
            +D + ++K P+ +E  MK IE+ N LVF V+ +A K  ++ A+K++++ +   +NT I P G KKAY+ L  +Y+A +VA  +GI
Sbjct:    1 MDAFDVIKTPIVSEKTMKLIEEENRLVFYVERKATKADVRAAIKELFDAEVADINTSITPKGKKKAYITLKDEYNAGEVAASLGI 85          
The following BLAST results are available for this feature:
BLAST of GO241919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RL23_SULAC6.178e-1548.1550S ribosomal protein L23P OS=Sulfolobus acidocald... [more]
RL23_METVS1.376e-1442.3550S ribosomal protein L23P OS=Methanococcus vannie... [more]
RL23_SULSO8.920e-1446.2550S ribosomal protein L23P OS=Sulfolobus solfatari... [more]
RL23_STAMF8.920e-1444.5850S ribosomal protein L23P OS=Staphylothermus mari... [more]
RL23_SULTO1.165e-1348.1550S ribosomal protein L23P OS=Sulfolobus tokodaii ... [more]
RL23_AERPE1.165e-1348.6550S ribosomal protein L23P OS=Aeropyrum pernix GN=... [more]
RL23_METM72.595e-1340.0050S ribosomal protein L23P OS=Methanococcus maripa... [more]
RL23_METM52.595e-1340.0050S ribosomal protein L23P OS=Methanococcus maripa... [more]
RL23_PYRAE3.390e-1340.7450S ribosomal protein L23P OS=Pyrobaculum aerophil... [more]
RL23_METMP3.390e-1338.8250S ribosomal protein L23P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank description567 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 709 5, mRNA sequence.