GO241856

Overview
NameGO241856
Unique NameGO241856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241856 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 5.969e-26
Identity = 61/178 (34.27%), Postives = 93/178 (52.25%), Query Frame = 3
Query:  204 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 737
            F     S+F  +E  + ++GL NAGKT+++  +  G      IPT+GFN+  V   N+  ++WDLGGQ   R  W  Y     A++YVVD++D D + +++ E H +L +  L G  +L+  NK D PGAL   A+T+ + L  I  R+   F         +   +DWL    KS S
Sbjct:    5 FTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSGS 181          
BLAST of GO241856 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 5.969e-26
Identity = 61/178 (34.27%), Postives = 93/178 (52.25%), Query Frame = 3
Query:  204 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 737
            F     S+F  +E  + ++GL NAGKT+++  +  G      IPT+GFN+  V   N+  ++WDLGGQ   R  W  Y     A++YVVD++D D + +++ E H +L +  L G  +L+  NK D PGAL   A+T+ + L  I  R+   F         +   +DWL    KS S
Sbjct:    5 FTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSGS 181          
BLAST of GO241856 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.962e-25
Identity = 63/184 (34.24%), Postives = 98/184 (53.26%), Query Frame = 3
Query:  186 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 737
            MGL   F      LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D D +  +R ELH +LN+  L    LLV  NK D P A++   +TD++GL S+  R              +   +DWL  +  +KS
Sbjct:    1 MGL--TFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIATKS 181          
BLAST of GO241856 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 5.053e-25
Identity = 63/184 (34.24%), Postives = 99/184 (53.80%), Query Frame = 3
Query:  186 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 737
            MGL  +F      LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D D +  +R ELH +LN+  L    LLV  NK D P A++   + D++GL S+  R          +   +   +DWL  +  SKS
Sbjct:    1 MGL--SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKS 181          
BLAST of GO241856 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 5.053e-25
Identity = 63/184 (34.24%), Postives = 100/184 (54.35%), Query Frame = 3
Query:  186 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 737
            MGL  +F      LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D D +  +R ELH +LN+  L    LLV  NK D P A++   +TD++GL S+  R          +   +   +DWL  +  SK+
Sbjct:    1 MGL--SFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of GO241856 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 6.600e-25
Identity = 62/184 (33.70%), Postives = 100/184 (54.35%), Query Frame = 3
Query:  186 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 737
            MGL  +F      LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D D +  +R ELH +LN+  L    LLV  NK D P A++   +TD++GL S+  R          +   +   ++WL  +  SK+
Sbjct:    1 MGL--SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASKA 181          
BLAST of GO241856 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 6.600e-25
Identity = 62/184 (33.70%), Postives = 99/184 (53.80%), Query Frame = 3
Query:  186 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 737
            MGL  +F      LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D D +  +R ELH +LN+  L    LLV  NK D P A++   +TD++GL S+  R          +   +   +DWL  +   K+
Sbjct:    1 MGL--SFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGKA 181          
BLAST of GO241856 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 8.619e-25
Identity = 62/184 (33.70%), Postives = 99/184 (53.80%), Query Frame = 3
Query:  186 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 737
            MGL   F      LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R ELH +LN+  L    LLV  NK D P A++   +TD++GL S+  R          +   +   +DWL  +  SK+
Sbjct:    1 MGL--TFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of GO241856 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.470e-24
Identity = 62/184 (33.70%), Postives = 100/184 (54.35%), Query Frame = 3
Query:  186 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 737
            MGL   F   L  LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R ELH +LN+  L    LLV  NK D P A++   +TD++GL S+  R          +   +   +DWL  +  +K+
Sbjct:    1 MGL--RFTKALSRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANKT 181          
BLAST of GO241856 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.920e-24
Identity = 61/184 (33.15%), Postives = 99/184 (53.80%), Query Frame = 3
Query:  186 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 737
            MGL   F      LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R ELH +LN+  L    LLV  NK D P A++   +TD++GL S+  R          +   +   +DWL  +  +K+
Sbjct:    1 MGL--TFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
The following BLAST results are available for this feature:
BLAST of GO241856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
ARF3_ARATH5.969e-2634.27ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARF1_BRARP5.969e-2634.27ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARF_MAIZE2.962e-2534.24ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF1_DAUCA5.053e-2534.24ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF1_ARATH5.053e-2534.24ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF_VIGUN6.600e-2533.70ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF2_ARATH6.600e-2533.70ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_ORYSJ8.619e-2533.70ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF1_CHLRE1.470e-2433.70ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF2_ORYSJ1.920e-2433.15ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank description504 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 641 5, mRNA sequence.