GO241856

Overview
NameGO241856
Unique NameGO241856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241856 vs. ExPASy Swiss-Prot
Match: ARLX_DICDI (ADP-ribosylation factor-like protein DDB_G0292332 OS=Dictyostelium discoideum GN=DDB_G0292332 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.202e-12
Identity = 50/184 (27.17%), Postives = 99/184 (53.80%), Query Frame = 3
Query:  207 LNWLRSLF-FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDM-----------IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA-VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVC--CFMISCKNSTNIDSVIDWL 713
            ++++++LF F    ++ ++G++N GKT+L+  +    YSE++           IPT GFN+  +    V   +WD+GG+   R  +  Y  + + +I++V D++D ++L  S+ E   L N+ SL  +P L++ NK D    L +Q +  +  LK+  D+       ++S  N+ ++   I+W+
Sbjct:    5 ISFIKNLFGFLTIKKVMILGVENVGKTTLLYNIYKF-YSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQD----LKQQTIEIDEILKTYFDKSSINETILMSQNNNDDLIKCINWI 183          
BLAST of GO241856 vs. ExPASy Swiss-Prot
Match: ARD1_CAEEL (Putative GTP-binding protein ard-1 homolog OS=Caenorhabditis elegans GN=arc-1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.876e-12
Identity = 48/160 (30.00%), Postives = 76/160 (47.50%), Query Frame = 3
Query:  240 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 707
            E  + L+GL  AGKTS+V  +        M P  T+GFN+  +   N  +  WD+GG P+ R +W+ Y     AI YV+D    +  S +  EL+ +++ P +   P++V  N+ D   AL+    AL  ++          CC        + ID +ID
Sbjct:  369 ESRVVLLGLDGAGKTSIVRRLKKVQMDTVMAPHPTIGFNIETIHYKNYRLNFWDVGGLPKLRHLWKHYYSNAQAIFYVIDGYAVERFSEAIKELNRVMSDPLVGTCPVIVAVNRKD-GYALNGHMDALLSQLEALPFQHHFHCC---DAATGSGIDQIID 524          
BLAST of GO241856 vs. ExPASy Swiss-Prot
Match: RAB7B_BOVIN (Ras-related protein Rab-7b OS=Bos taurus GN=RAB7B PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.427e-11
Identity = 50/173 (28.90%), Postives = 84/173 (48.55%), Query Frame = 3
Query:  234 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNK--PSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 734
            K +++L +IG    GKTSL++      + ED   T+G ++  + +   + T+KL  WD GGQ RFRSM   + +     V   D  D ++     +   D+L K  P     P++VLGNKID    L  + +  E+      ++++  F +S KN  N+    + L   + S+
Sbjct:    6 KVDLKLIIIGALGVGKTSLLHRYVHKTFYEDYQTTLGASILSKIIILEDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCVLAFDVTDLESFEALETWRGDVLAKTIPMEQPYPMVVLGNKID----LEDRQVPQEVAQGWCKEKDIPYFEVSAKNDINVVQAFEMLASRALSR 174          
BLAST of GO241856 vs. ExPASy Swiss-Prot
Match: ARL9_HUMAN (ADP-ribosylation factor-like protein 9 OS=Homo sapiens GN=ARL9 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.427e-11
Identity = 44/159 (27.67%), Postives = 81/159 (50.94%), Query Frame = 3
Query:  234 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI-TDREVCCF-MISCKNSTNIDSVI 704
            ++  ++ ++GL  AGKTS+++ +A+      + PT GF+   +   +  ++  ++GG   FRS WE Y      +++VVD+AD   L  ++  LH L+    +  +PL+V  NK D   A     + + + L  +  DR++  F     KN + I S +
Sbjct:   16 EKNKQILVLGLDGAGKTSVLHSLASNRVQHSVAPTQGFHAVCINTEDSQMEFLEIGGSKPFRSYWEMYLSKGLLLIFVVDSADHSRLPEAKKYLHQLIAANPV--LPLVVFANKQDLEAAYHITDIHEALALSEVGNDRKMFLFGTYLTKNGSEIPSTM 172          
BLAST of GO241856 vs. ExPASy Swiss-Prot
Match: RABC_DICDI (Ras-related protein RabC OS=Dictyostelium discoideum GN=rabC PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 3.180e-11
Identity = 43/164 (26.22%), Postives = 85/164 (51.83%), Query Frame = 3
Query:  246 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 719
            ++ L+G    GK+S++       +S+   PT+G  FN++    K T   V ++LWD  GQ RF+S+ + + R    ++ V D  DP +    ++ + D +N+ +  G+ ++++GNK D    ++++ +T E G +     +     +S K +  +  V D LV+
Sbjct:    8 KIILVGESGVGKSSILVRFTDNTFSQHFAPTLGVDFNVKTIRNKETGQTVKLQLWDTAGQERFKSITQTFYRGSHGVIVVYDVTDPKSFERCKNWVED-INQYTQDGMIIILVGNKSD---MVAQRKVTFEQGQEMAEQLKTKFLEVSAKENNGVTQVFDLLVQ 167          
BLAST of GO241856 vs. ExPASy Swiss-Prot
Match: RAB7B_HUMAN (Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.180e-11
Identity = 47/173 (27.17%), Postives = 85/173 (49.13%), Query Frame = 3
Query:  234 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNK--PSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 734
            K +++L ++G    GKTSL++      + E+   T+G ++  + +  G+ T+KL  WD GGQ RFRSM   + +     +   D  D ++         D+L K  P     P+++LGNKID    L+ + +  E+      ++++  F +S KN  N+    + L   + S+
Sbjct:    6 KVDLKLIIVGAIGVGKTSLLHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKID----LADRKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSR 174          
BLAST of GO241856 vs. ExPASy Swiss-Prot
Match: RAB7B_MOUSE (Ras-related protein Rab-7b OS=Mus musculus GN=Rab7b PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.084e-11
Identity = 47/170 (27.65%), Postives = 83/170 (48.82%), Query Frame = 3
Query:  234 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNK--PSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 725
            K +++L ++G    GKTSL++      + E+   T+G ++  + +   + T+KL  WD GGQ RFRSM   + +     +   D  DP++         D+L K  P     P++VLGNKID    L  + ++ E+      ++++  F +S KN  N+    + L   +
Sbjct:    6 KVDLKLIIVGALGVGKTSLLHQYVHKTFFEEYQTTLGASILSKIIILDDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDPESFEALDIWRDDVLAKIIPMEQSYPMVVLGNKID----LEDRKVSQEVVHGWCKEKDMPYFEVSAKNDINVVQAFEVLASRA 171          
BLAST of GO241856 vs. ExPASy Swiss-Prot
Match: ARL5C_HUMAN (Putative ADP-ribosylation factor-like protein 5C OS=Homo sapiens GN=ARL5C PE=2 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 7.084e-11
Identity = 41/152 (26.97%), Postives = 71/152 (46.71%), Query Frame = 3
Query:  216 LRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDR----EVCC 659
            L S+F  QE  + ++GL N GKT+++    T      M PT+G N+ ++        +WD+        +W  Y      I+ V+D+ D D L  +R EL+ +L   +L    +L+  NK D   ++    ++  + L +I D     + CC
Sbjct:    8 LMSIFGNQEHTVIIVGLDNEGKTTILYRFLTNEVVH-MCPTIGSNVEEIILPKTHFFMWDIVRPEALSFIWNTYYSNTEFIILVIDSTDRDRLLTTREELYKMLAHEALQDASVLIFANKQDVKDSMRMVEISHFLTLSTIKDHSWHIQGCC 158          
The following BLAST results are available for this feature:
BLAST of GO241856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
ARLX_DICDI2.202e-1227.17ADP-ribosylation factor-like protein DDB_G0292332 ... [more]
ARD1_CAEEL2.876e-1230.00Putative GTP-binding protein ard-1 homolog OS=Caen... [more]
RAB7B_BOVIN1.427e-1128.90Ras-related protein Rab-7b OS=Bos taurus GN=RAB7B ... [more]
ARL9_HUMAN1.427e-1127.67ADP-ribosylation factor-like protein 9 OS=Homo sap... [more]
RABC_DICDI3.180e-1126.22Ras-related protein RabC OS=Dictyostelium discoide... [more]
RAB7B_HUMAN3.180e-1127.17Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7... [more]
RAB7B_MOUSE7.084e-1127.65Ras-related protein Rab-7b OS=Mus musculus GN=Rab7... [more]
ARL5C_HUMAN7.084e-1126.97Putative ADP-ribosylation factor-like protein 5C O... [more]

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Properties
Property NameValue
Genbank description504 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 641 5, mRNA sequence.