GO241855

Overview
NameGO241855
Unique NameGO241855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12826 contig Csv1_Contig12826:881..1506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241855 vs. ExPASy Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F-type 2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.726e-12
Identity = 32/86 (37.21%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  176 AAKKLIVVDFTASWCPPCKLMPPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 430
            A  K++V+D    WC PCK++ P   EL++K   ++FLK+D + + K +A+E  +  +PTF + K+ KV++ + GAK ++L  A+E
Sbjct:   95 AGDKIVVLDMYTQWCGPCKVIAPKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAIE 180          
BLAST of GO241855 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.726e-12
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 2
Query:  140 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMPPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 430
            ++S  E  +K   A   +VVDF A+WC PCK + P L +L++    + F KVDVDEL  VA    V AMPTF   K G+  E + GA    +Q  V+
Sbjct:    6 IKSVAEYKEKVTDATGPVVVDFHATWCGPCKAIAPALEKLSETHTGIQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGANPAAIQAGVK 102          
BLAST of GO241855 vs. ExPASy Swiss-Prot
Match: TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.560e-12
Identity = 32/86 (37.21%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  176 AAKKLIVVDFTASWCPPCKLMPPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 430
            A +K++V+D    WC PCK++ P    L++K   V+FLK+D + E + +A+E  +  +PTF + K+ +V++ + GAK D+L  A+E
Sbjct:   88 AGEKIVVLDMYTQWCGPCKVIAPKYKALSEKYEDVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAAIE 173          
BLAST of GO241855 vs. ExPASy Swiss-Prot
Match: THIO_MYCGA (Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.560e-12
Identity = 31/88 (35.23%), Postives = 58/88 (65.91%), Query Frame = 2
Query:  158 QLQKGIAAKKLIVVDFTASWCPPCKLMPPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVG-AKKDELQ 418
            +L + ++  K +VVDF A+WC PCK++ PI  E+A+      F+KVDVD+   ++ E+ + ++PT +  ++GK+ ++ +G   K+EL+
Sbjct:    9 ELDQLLSTNKKVVVDFYANWCGPCKILGPIFEEVAQDKKDWTFVKVDVDQANEISSEYEIRSIPTVIFFQDGKMADKRIGFIPKNELK 96          
BLAST of GO241855 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.560e-12
Identity = 32/90 (35.56%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  173 IAAKKLIVVDFTASWCPPCKLMPPILSELAKK-LPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDELQLAVEKH 436
            + ++KL++VDF A WC PC+++ P++ ELA++ +  V  +K++ DE  S++ E+ + ++PT +L K+GK ++ ++GA  K  L  A++K+
Sbjct:   17 VNSEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKY 106          
BLAST of GO241855 vs. ExPASy Swiss-Prot
Match: GLRX3_MOUSE (Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.650e-12
Identity = 37/116 (31.90%), Postives = 68/116 (58.62%), Query Frame = 2
Query:  107 AEEGQ----VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMPPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHAT 442
            AE G+    V+   + + + E L+  +  K L+VV F A W P C  M  +++ELAK+ P V F+K++ + +  V+E++ + ++PTF+  K  + ++R+ GA   EL   V++H +
Sbjct:    6 AEAGEAAVAVVEVGSAQQFEELLR--LKTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVS 119          
BLAST of GO241855 vs. ExPASy Swiss-Prot
Match: GLRX3_BOVIN (Glutaredoxin-3 OS=Bos taurus GN=GLRX3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.073e-12
Identity = 32/90 (35.56%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  173 IAAKKLIVVDFTASWCPPCKLMPPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHAT 442
            + AK L+VV F A W P C  M  +++ELAK+   V F+K++ + +  V+E++ + ++PTF+  K  + ++R+ GA   EL   V++HA+
Sbjct:   27 LRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHQQVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHAS 116          
BLAST of GO241855 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.932e-12
Identity = 37/102 (36.27%), Postives = 64/102 (62.75%), Query Frame = 2
Query:  137 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMPPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 436
            T  ++++ +Q G+      +VDF A+WC PCK++ P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   +EKH
Sbjct:    7 TDSNFDDNIQSGVN-----LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKH 103          
BLAST of GO241855 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 7.932e-12
Identity = 37/102 (36.27%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  137 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMPPILSELAKKLPAVI-FLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 436
            T +S++ +  +G+     ++ DF A WC PCK++ P+L EL +++   +  +K+DVDE +  A ++ V ++PT ++ K+G+V+E  VG K K+ LQ  V KH
Sbjct:    7 TDQSFSAETSEGV-----VLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKH 103          
BLAST of GO241855 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.036e-11
Identity = 37/101 (36.63%), Postives = 54/101 (53.47%), Query Frame = 2
Query:  122 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMPPILSELAKKL--PAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQ 418
            VI   + + W   + K       + VD  A WC PCK + P+ S+LA K   P  +F KV+VDE + +A    V+AMPTFV  + GK ++ + GA    L+
Sbjct:    3 VIEIRSYQHWISTIPKS----GYLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALK 99          
The following BLAST results are available for this feature:
BLAST of GO241855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
TRXF2_ARATH2.726e-1237.21Thioredoxin F-type 2, chloroplastic OS=Arabidopsis... [more]
THIO_PENCH2.726e-1241.24Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
TRXF_BRANA3.560e-1237.21Thioredoxin F-type, chloroplastic OS=Brassica napu... [more]
THIO_MYCGA3.560e-1235.23Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE... [more]
THIO_CYACA3.560e-1235.56Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
GLRX3_MOUSE4.650e-1231.90Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1[more]
GLRX3_BOVIN6.073e-1235.56Glutaredoxin-3 OS=Bos taurus GN=GLRX3 PE=2 SV=1[more]
THIO_STAS17.932e-1236.27Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIO_BACSU7.932e-1236.27Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]
TXL1_SCHPO1.036e-1136.63Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank description503 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 640 5, mRNA sequence.