GO241855

Overview
NameGO241855
Unique NameGO241855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241855 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.141e-11
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  191 IVVDFTASWCPPCKLMPPILSEL-AKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEK 433
            +VVDF A WC PCK++ P L ++ AK+   V+  KVD+D+   +A E+ V A+PT +  K G V+++ VG K +D+L+  ++K
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKK 163          
BLAST of GO241855 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.141e-11
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  191 IVVDFTASWCPPCKLMPPILSEL-AKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEK 433
            +VVDF A WC PCK++ P L ++ AK+   V+  KVD+D+   +A E+ V A+PT +  K G V+++ VG K +D+L+  ++K
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKK 163          
BLAST of GO241855 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.141e-11
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  191 IVVDFTASWCPPCKLMPPILSEL-AKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEK 433
            +VVDF A WC PCK++ P L ++ AK+   V+  KVD+D+   +A E+ V A+PT +  K G V+++ VG K +D+L+  ++K
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKK 163          
BLAST of GO241855 vs. ExPASy Swiss-Prot
Match: THIO_STAES (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.715e-11
Identity = 35/102 (34.31%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  137 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMPPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 436
            T   ++ +++ G+      +VDF A+WC PCK++ P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:    7 TDSDFDSKIESGVK-----LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKH 103          
BLAST of GO241855 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.715e-11
Identity = 35/102 (34.31%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  137 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMPPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 436
            T   ++ +++ G+      +VDF A+WC PCK++ P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:    7 TDSDFDSKIESGVK-----LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKH 103          
BLAST of GO241855 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.715e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  194 VVDFTASWCPPCKLMPPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 436
            +VDF A+WC PCK++ P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of GO241855 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.715e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  194 VVDFTASWCPPCKLMPPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 436
            +VDF A+WC PCK++ P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of GO241855 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.715e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  194 VVDFTASWCPPCKLMPPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 436
            +VDF A+WC PCK++ P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of GO241855 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.715e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  194 VVDFTASWCPPCKLMPPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 436
            +VDF A+WC PCK++ P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of GO241855 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.715e-11
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  194 VVDFTASWCPPCKLMPPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 436
            +VDF A+WC PCK++ P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
The following BLAST results are available for this feature:
BLAST of GO241855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
THIOM_RAT5.141e-1140.96Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]
THIOM_MOUSE5.141e-1140.96Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]
THIOM_HUMAN5.141e-1140.96Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]
THIO_STAES6.715e-1134.31Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAEQ6.715e-1134.31Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAAW6.715e-1139.76Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]
THIO_STAAU6.715e-1139.76Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS6.715e-1139.76Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]
THIO_STAAR6.715e-1139.76Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN6.715e-1139.76Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]

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Properties
Property NameValue
Genbank description503 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 640 5, mRNA sequence.