GO241698

Overview
NameGO241698
Unique NameGO241698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13756 contig Csv1_Contig13756:1..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241698 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.000e-14
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 3
Query:  363 GTSSLETLLRNFAGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCR 623
            G  ++ T L N     G PPA    ++A+P+I++ E E    G EC VC E+Y VGE  R++PC H FH +CI  WL  + +CPVCR
Sbjct:  184 GLDTIITQLLNQFENTGPPPADTDKIQALPTIQITE-EHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 269          
BLAST of GO241698 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 3
Query:  363 GTSSLETLLRNFAGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCR 623
            G  ++ T L N     G PPA    ++A+P+I++ E E    G EC VC E+Y VGE  R++PC H FH +CI  WL  + +CPVCR
Sbjct:  183 GLDTIITQLLNQFENTGPPPADTEKIQALPTIQITE-EHVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 268          
BLAST of GO241698 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 3
Query:  363 GTSSLETLLRNFAGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCR 623
            G  ++ T L N     G PPA K  ++A+P++ V E E    G EC VC ++Y +GE  R++PC H FH  CI  WL  + SCPVCR
Sbjct:  185 GLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTE-EHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCR 270          
BLAST of GO241698 vs. ExPASy Swiss-Prot
Match: RN126_BOVIN (RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.707e-14
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 3
Query:  363 GTSSLETLLRNFAGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCR 623
            G  ++ T L N     G PPA K  ++A+P++ V E E    G EC VC ++Y +GE  R++PC H FH  CI  WL  + SCPVCR
Sbjct:  188 GLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTE-EHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCR 273          
BLAST of GO241698 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.707e-14
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  363 GTSSLETLLRNFAGK---DGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVEEEESGNKRDE 671
            G + L+ ++    G+    G PPA K  + ++P++ V + E+  +G EC VC E+Y V E  R++PC H FH++CI  WL ++ +CPVCR  +  E+    ++  E
Sbjct:  181 GQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQ-EQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQSQSTE 285          
BLAST of GO241698 vs. ExPASy Swiss-Prot
Match: PJA1_MOUSE (E3 ubiquitin-protein ligase Praja1 OS=Mus musculus GN=Pja1 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.911e-14
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 3
Query:  417 PPASKASVEAMPSIKVGESEEEALGGE--CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 635
            PPASK S++A+P I V E +  A+G E  C +C  EY  GEVA E+PC H FH  C+  WL  +G+CPVCR   P
Sbjct:  502 PPASKESIDALPEILVTE-DHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 575          
BLAST of GO241698 vs. ExPASy Swiss-Prot
Match: PJA1_HUMAN (E3 ubiquitin-protein ligase Praja1 OS=Homo sapiens GN=PJA1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.911e-14
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 3
Query:  417 PPASKASVEAMPSIKVGESEEEALGGE--CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMP 635
            PPASK S++A+P I V E +  A+G E  C +C  EY  GEVA E+PC H FH  C+  WL  +G+CPVCR   P
Sbjct:  567 PPASKESIDALPEILVTE-DHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 640          
BLAST of GO241698 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.802e-14
Identity = 37/106 (34.91%), Postives = 60/106 (56.60%), Query Frame = 3
Query:  363 GTSSLETLLRNFAGK---DGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCRYKMPVEEEESGNKRDE 671
            G + L+ ++    G+    G PPA K  + ++P++ V + E+   G EC VC E+Y V E  R++PC H FH++CI  WL ++ +CPVCR  +  E+     +  E
Sbjct:  182 GQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQ-EQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQTQSSE 286          
BLAST of GO241698 vs. ExPASy Swiss-Prot
Match: RNF44_RAT (RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12
Identity = 27/66 (40.91%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  426 SKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCR 623
            +KA +E +PS +      ++    CVVC  ++EV ++ R +PC H+FHA C++KWL  N +CP+CR
Sbjct:  274 TKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 339          
BLAST of GO241698 vs. ExPASy Swiss-Prot
Match: RNF44_MOUSE (RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12
Identity = 27/66 (40.91%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  426 SKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGINGSCPVCR 623
            +KA +E +PS +      ++    CVVC  ++EV ++ R +PC H+FHA C++KWL  N +CP+CR
Sbjct:  331 TKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 396          
The following BLAST results are available for this feature:
BLAST of GO241698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
R126B_XENLA1.000e-1443.68RING finger protein 126-B OS=Xenopus laevis GN=rnf... [more]
RN126_XENTR1.307e-1443.68RING finger protein 126 OS=Xenopus tropicalis GN=r... [more]
RN126_HUMAN1.307e-1443.68RING finger protein 126 OS=Homo sapiens GN=RNF126 ... [more]
RN126_BOVIN1.707e-1443.68RING finger protein 126 OS=Bos taurus GN=RNF126 PE... [more]
RN115_HUMAN1.707e-1434.91RING finger protein 115 OS=Homo sapiens GN=RNF115 ... [more]
PJA1_MOUSE2.911e-1450.67E3 ubiquitin-protein ligase Praja1 OS=Mus musculus... [more]
PJA1_HUMAN2.911e-1450.67E3 ubiquitin-protein ligase Praja1 OS=Homo sapiens... [more]
RN115_MOUSE3.802e-1434.91RING finger protein 115 OS=Mus musculus GN=Rnf115 ... [more]
RNF44_RAT1.597e-1240.91RING finger protein 44 OS=Rattus norvegicus GN=Rnf... [more]
RNF44_MOUSE1.597e-1240.91RING finger protein 44 OS=Mus musculus GN=Rnf44 PE... [more]

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Properties
Property NameValue
Genbank description346 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 475 5, mRNA sequence.