GO241630

Overview
NameGO241630
Unique NameGO241630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC_DROTO (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila tolteca GN=Sod PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.218e-23
Identity = 53/100 (53.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:  283 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWG 579
            KG++ F Q  +     V G++ GL  GLHGFH+H  G+ TNGC S+GPHFNP  K+HGAP+D  RH GDLGNI A  D    VSI D  I L G +SI G
Sbjct:    6 KGTVFFEQETSEAPVKVTGEVLGLTKGLHGFHVHEFGNNTNGCMSSGPHFNPGNKEHGAPTDGNRHLGDLGNIQAAGDSPTAVSITDSKITLFGANSIIG 105          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC_DROYA (Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba GN=Sod PE=3 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 5.508e-23
Identity = 54/100 (54.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:  283 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWG 579
            KG++ F Q  +     V G++ GL  GLHGFH+H  GD TNGC S+GPHFNP  K+HGAP D  RH GDLGNI A  D   +VSI D  I L G  SI G
Sbjct:   14 KGTVFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIG 113          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC_DROTE (Superoxide dismutase [Cu-Zn] OS=Drosophila teissieri GN=Sod PE=3 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 5.508e-23
Identity = 54/100 (54.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:  283 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWG 579
            KG++ F Q  +     V G++ GL  GLHGFH+H  GD TNGC S+GPHFNP  K+HGAP D  RH GDLGNI A  D   +VSI D  I L G  SI G
Sbjct:   14 KGTVFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIG 113          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC_DROOR (Superoxide dismutase [Cu-Zn] OS=Drosophila orena GN=Sod PE=3 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 5.508e-23
Identity = 54/100 (54.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:  283 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWG 579
            KG++ F Q  +     V G++ GL  GLHGFH+H  GD TNGC S+GPHFNP  K+HGAP D  RH GDLGNI A  D   +VSI D  I L G  SI G
Sbjct:   14 KGTVFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSRITLFGADSIIG 113          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC_DROMD (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila madeirensis GN=Sod PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.508e-23
Identity = 53/100 (53.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  283 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWG 579
            KG + F Q  +     V G++ GL  GLHGFH+H  GD TNGC S+GPH+NP  K+HGAP+D  RH GDLGNI A  D    VSI D  I L G  SI G
Sbjct:    6 KGIVFFEQETSEAPVKVTGEVLGLAKGLHGFHVHEFGDNTNGCMSSGPHYNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIG 105          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC_CANAL (Superoxide dismutase [Cu-Zn] OS=Candida albicans GN=SOD1 PE=3 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 5.508e-23
Identity = 54/114 (47.37%), Postives = 72/114 (63.16%), Query Frame = 1
Query:  259 LISGATSVKGSLHFVQ-GPNGVTHVKGKITGLKPG-LHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            ++ G + V+G++HF Q   +  T +  +I G  P  L GFHIH  GD TNGC S GPHFNP  K HGAP D+ERH GDLGNI    +GVA+ +  D +I L G+ SI G  +++
Sbjct:    7 VVRGDSKVQGTVHFEQESESAPTTISWEIEGNDPNALRGFHIHQFGDNTNGCTSAGPHFNPFGKQHGAPEDDERHVGDLGNISTDGNGVAKGTKQDLLIKLIGKDSILGRTIVV 120          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC_DROPE (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila persimilis GN=Sod PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.194e-23
Identity = 54/100 (54.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  283 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWG 579
            KG++ F Q  +     V G+  GL  GLHGFH+H  GD TNGC S+GPHFNP  K+HGAP+D  RH GDLGNI A  D    VSI D  I L G  SI G
Sbjct:    6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIG 105          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC_DROPB (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila pseudoobscura bogotana GN=Sod PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.194e-23
Identity = 54/100 (54.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  283 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWG 579
            KG++ F Q  +     V G+  GL  GLHGFH+H  GD TNGC S+GPHFNP  K+HGAP+D  RH GDLGNI A  D    VSI D  I L G  SI G
Sbjct:    6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIG 105          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC_DROMI (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila miranda GN=Sod PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.194e-23
Identity = 54/100 (54.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  283 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWG 579
            KG++ F Q  +     V G+  GL  GLHGFH+H  GD TNGC S+GPHFNP  K+HGAP+D  RH GDLGNI A  D    VSI D  I L G  SI G
Sbjct:    6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIG 105          
BLAST of GO241630 vs. ExPASy Swiss-Prot
Match: SODC_CRYGA (Superoxide dismutase [Cu-Zn] OS=Cryptococcus gattii GN=SOD1 PE=2 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.093e-22
Identity = 53/114 (46.49%), Postives = 70/114 (61.40%), Query Frame = 1
Query:  259 LISGATSVKGSLHFVQGPNGV-THVKGKITGLKPGLH-GFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHAGDLGNIVAGPDGVAEVSIADRMIPLTGQHSIWGXGLLL 594
            ++ G + V G + F Q   G    V G I  L      GFH+H  GD TNGC S GPHFNP  K+HGAPSD+ERH GDLGN+    +GVA V+I+D+ + L G +SI G  +++
Sbjct:    7 VLKGDSPVTGVITFTQEKEGAPVTVSGDIKNLDANAERGFHVHEFGDNTNGCTSAGPHFNPHGKNHGAPSDSERHVGDLGNVKTDGNGVASVNISDKSLSLFGPYSIIGRTIVV 120          
The following BLAST results are available for this feature:
BLAST of GO241630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
SODC_DROTO4.218e-2353.00Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROYA5.508e-2354.00Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba ... [more]
SODC_DROTE5.508e-2354.00Superoxide dismutase [Cu-Zn] OS=Drosophila teissie... [more]
SODC_DROOR5.508e-2354.00Superoxide dismutase [Cu-Zn] OS=Drosophila orena G... [more]
SODC_DROMD5.508e-2353.00Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_CANAL5.508e-2347.37Superoxide dismutase [Cu-Zn] OS=Candida albicans G... [more]
SODC_DROPE7.194e-2354.00Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROPB7.194e-2354.00Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROMI7.194e-2354.00Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_CRYGA2.093e-2246.49Superoxide dismutase [Cu-Zn] OS=Cryptococcus gatti... [more]

Pages

back to top
Properties
Property NameValue
Genbank description278 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 400 5, mRNA sequence.