GO241591

Overview
NameGO241591
Unique NameGO241591
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241591 vs. ExPASy Swiss-Prot
Match: IF5A_KORCO (Translation initiation factor 5A OS=Korarchaeum cryptofilum (strain OPF8) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.919e-11
Identity = 38/107 (35.51%), Postives = 57/107 (53.27%), Query Frame = 2
Query:  164 AGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDG 484
            AG +RK  Y+++   PC+V+EVS SK GKHG AK       IF G +   I P+    ++P V++   Q+I++     V L+        +L LP D  L ++LK G
Sbjct:    8 AGDLRKGSYVILDDEPCEVLEVSKSKPGKHGSAKVRVEARGIFDGARRSKIFPADALVEIPIVDKKTAQVINV-YGNVVQLMDLETYETFELPLPEDPELASRLKSG 113          
BLAST of GO241591 vs. ExPASy Swiss-Prot
Match: IF5A_SULAC (Translation initiation factor 5A OS=Sulfolobus acidocaldarius GN=eif5a PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 33/106 (31.13%), Postives = 60/106 (56.60%), Query Frame = 2
Query:  167 GTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDG 484
            G ++   Y++I   PC+VVE++ +KTGKHG AK + V I +F+G+K   + P     +VP + +   Q++    D    +  E+  T  DL  PT+  ++++++ G
Sbjct:    9 GDLKVGSYVMIDGEPCRVVEITKAKTGKHGSAKANVVAIGLFTGQKRSLMAPVDQQVEVPIIEKHVGQILADKGDNLTIMDLESYET-FDLEKPTENEIVSKIRPG 113          
BLAST of GO241591 vs. ExPASy Swiss-Prot
Match: IF5A_HYPBU (Translation initiation factor 5A OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 37/106 (34.91%), Postives = 57/106 (53.77%), Query Frame = 2
Query:  167 GTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDG 484
            G ++   YIVI   PC++VE+S +KTGKHG AK H V + +FSG K     P     +VP +++   Q+I    D  V ++        ++  P DE L ++L+ G
Sbjct:    9 GELKVGSYIVIDGEPCRIVEMSKAKTGKHGSAKAHVVAVCLFSGNKKTLTAPVDARVEVPIIDKRIGQVIADMGD-MVQIMDMETYETFEVEKPKDEDLKSKLQPG 113          
The following BLAST results are available for this feature:
BLAST of GO241591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
IF5A_KORCO2.919e-1135.51Translation initiation factor 5A OS=Korarchaeum cr... [more]
IF5A_SULAC4.979e-1131.13Translation initiation factor 5A OS=Sulfolobus aci... [more]
IF5A_HYPBU6.503e-1134.91Translation initiation factor 5A OS=Hyperthermus b... [more]

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Properties
Property NameValue
Genbank description239 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 358 5, mRNA sequence.