GO241583

Overview
NameGO241583
Unique NameGO241583
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241583 vs. ExPASy Swiss-Prot
Match: PSB2_PICGU (Probable proteasome subunit beta type-2 OS=Pichia guilliermondii GN=PRO2 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.728e-32
Identity = 73/166 (43.98%), Postives = 104/166 (62.65%), Query Frame = 2
Query:   50 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFR-NGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCI 538
            M+ V G+  +   ++    +A   I V K  +DK   L+SH L+A SGE GD VQF E+IQ N  LY  R N   L+  A A+F R +LAT++R + PY VN+LLAGYD  TG PSL +IDY+ T  ++  AA GY  ++  S++D+H+  GM+ E+ +DL+ KCI
Sbjct:    1 MDIVLGIRVEDCTLVATSKAATRGISVLKDTDDKTRQLNSHNLMAYSGEAGDTVQFAEYIQANTQLYTMRENDTELSPKATASFVRNQLATSIRSRKPYQVNVLLAGYDTNTGKPSLNWIDYLGTQVELPYAAHGYAGFYCTSLLDKHYKKGMNFEDGLDLLKKCI 166          
BLAST of GO241583 vs. ExPASy Swiss-Prot
Match: PSB2_SCHPO (Probable proteasome subunit beta type-2 OS=Schizosaccharomyces pombe GN=SPAC31A2.04c PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.280e-32
Identity = 69/164 (42.07%), Postives = 105/164 (64.02%), Query Frame = 2
Query:   50 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKC 535
            ME +  + G  F +  + +SAV  I V K ++DK  +L+SH L+   GE GD   F E+I  N+SLY  R+ + L+  A A+FTR +LAT+LR + PY VNILLAGY+   G P L+++DY+AT  +V  A  GY S++ LS+ DR++   ++++EAV ++  C
Sbjct:    1 MESLLAVQGQDFVLTASSSSAVRGITVLKPDDDKSQILNSHNLMLYCGEAGDTTNFAEYIAANISLYTLRHNLNLSPEATASFTRKQLATSLRSRKPYQVNILLAGYETNLGKPELFWLDYLATCVRVPYACQGYSSFYCLSIFDRYYKPDLTIDEAVRIMKLC 164          

HSP 2 Score: 22.7126 bits (47), Expect = 2.280e-32
Identity = 8/21 (38.10%), Postives = 14/21 (66.67%), Query Frame = 3
Query:  543 EIRSRLVVAPPNFVIKIVDKD 605
            E++ R+ +    F+ K+VDKD
Sbjct:  167 ELKKRMPIDFKGFICKVVDKD 187          
BLAST of GO241583 vs. ExPASy Swiss-Prot
Match: PSB2_DROME (Probable proteasome subunit beta type-2 OS=Drosophila melanogaster GN=Prosbeta4R2 PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 3.698e-29
Identity = 66/166 (39.76%), Postives = 101/166 (60.84%), Query Frame = 2
Query:   47 AMECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCIL 541
            AME + G+ G  F +L +DT    S++  K ++ KI  L    ++A  G+ GD +QFT+FI KN+ LY+  +G  L+  +AA+FTR  LA  +R  + Y V +LLAGYD   GP L+YID       ++ A  G+GS F  S++ R+++S +S E+A  L+ KC+L
Sbjct:    2 AMETILGIKGPDFVMLASDTMQAKSLVFMKDDQSKIHRLSDFNMMATVGDGGDTIQFTDFISKNLHLYKISHGYHLSAKSAAHFTRKTLADYIRTNTRYQVAMLLAGYDAVEGPDLHYIDSYGAAQSINHAGHGWGSMFCGSILQRYWNSKLSQEDAYSLMKKCVL 167          

HSP 2 Score: 21.1718 bits (43), Expect = 3.698e-29
Identity = 8/19 (42.11%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  543 EIRSRLVVAPPNFVIKIVD 599
            EI+ RL++   NF + +VD
Sbjct:  168 EIQRRLIINQRNFEVYVVD 186          
BLAST of GO241583 vs. ExPASy Swiss-Prot
Match: PSB2_YEAST (Proteasome component C11 OS=Saccharomyces cerevisiae GN=PRE1 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.977e-28
Identity = 62/165 (37.58%), Postives = 96/165 (58.18%), Query Frame = 2
Query:   50 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCI 538
            M+ + G+      IL +  +    I V K ++DK   L  H L++ +GE GD VQF E+IQ N+ LY  R    L+  A ++F R ELA ++R + PY VN+L+ GYDK+   P LY IDY+ T  ++   A GY  +++ S++D H+   M+ EE +DL+  C+
Sbjct:    1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCV 165          
BLAST of GO241583 vs. ExPASy Swiss-Prot
Match: PSB2_TRYBB (Proteasome subunit beta type-2 OS=Trypanosoma brucei brucei GN=PSB4 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.570e-23
Identity = 64/164 (39.02%), Postives = 94/164 (57.32%), Query Frame = 2
Query:   77 DGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFR-NGIPLTTAAAANFTRGELATALRKSP--YMVNILLAGYDKE--------TGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKC 535
            D   +  A  +A + I +    EDKI  LDSHK++A +GE G R  F E+++ N++L + R +G  ++T A A+F R  LA ALR     Y VN LLAG+D          TG  LYY+DY+ TL +V     GYG+ F  +M+DR +   ++ +E V+L+ KC
Sbjct:   12 DFVLVAAAGLNAFYYIKI-TDTEDKITELDSHKVVACAGENGPRTHFVEYVKCNMALKKMREHGRMISTHATASFMRNTLAGALRSRDGLYPVNCLLAGFDVPASAEDDVATGAHLYYLDYLGTLQEVPYGCHGYGAPFVTAMLDRMWRPNLTAQEGVELMQKC 174          
BLAST of GO241583 vs. ExPASy Swiss-Prot
Match: PSB2_ENCCU (Probable proteasome subunit beta type-2 OS=Encephalitozoon cuniculi GN=PRE1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.050e-16
Identity = 44/163 (26.99%), Postives = 86/163 (52.76%), Query Frame = 2
Query:   50 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCI 538
            M+   G+ G  FAI+ ADT    SILV K N +K  V+    ++A +G  GD  +   ++ ++    + +NGI L+ +  A+  + ++  +LR+    ++ ++AG   E    L+ +D    +  V   A GY +YF   ++DR +   ++++ A+ ++ KC+
Sbjct:    1 MDSSIGIKGRNFAIVAADTKISSSILVVKENHEKFQVIKDRIVMAMTGNQGDAFRTMLYVSESALYEEIQNGIELSPSVLAHMIQNKVHESLRRRQLDISSIVAGRGPEK-YDLWSVDKYGAISSVPFCASGYAAYFVYGILDREYSEDITIDAALSIMQKCV 162          
BLAST of GO241583 vs. ExPASy Swiss-Prot
Match: PSB2_CAEEL (Proteasome subunit beta type-2 OS=Caenorhabditis elegans GN=pbs-4 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.624e-14
Identity = 52/167 (31.14%), Postives = 85/167 (50.90%), Query Frame = 2
Query:   50 MECVFGLVGDGFAILVADTSA-VHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSP-YMVNILLAGYD-KETGPSLYYIDYIAT-LHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCI 538
            M  + G+  + + IL AD +   +  ++  S  DK   L     +   GE GD  QF ++ ++N+ LY  RNG  ++ + A +F R  +A  LR    Y V++L+ GYD KE    L  +DY+A  L +      G+   F  ++MDR +   M+  E + L++KCI
Sbjct:    1 MHFLVGISTENYVILAADKATFAYGAILADSENDKEYRLGKKLTMMCIGEEGDVAQFGDWTKRNLQLYSVRNGYEVSPSCAHHFVRRSIAEGLRSQDHYTVDVLIGGYDDKEDKAFLGSVDYLANGLGQQPYLFRGFCGRFCYAIMDREYKKDMTEAEGLALMNKCI 167          
BLAST of GO241583 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.986e-12
Identity = 45/158 (28.48%), Postives = 77/158 (48.73%), Query Frame = 2
Query:   65 GLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCI 538
            GLV     +L ADT A    +++  N  KI  +D H  IA +G+ GD +     ++   +LY+   G  ++  A A      +    +  PY+   L+ GYD++  P L+ +D +  + + + AA G G  F+ S++D  +   MSV + + L  K I
Sbjct:   15 GLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLL-ANILNGSKYFPYLGWFLVGGYDEK--PRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAVKAI 169          
BLAST of GO241583 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.424e-12
Identity = 42/158 (26.58%), Postives = 75/158 (47.47%), Query Frame = 2
Query:   65 GLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCI 538
            G+V     +L AD  A    +++  N  KI  +D H  IA +G+ GD +     ++    LY  ++G  ++  A A      +    +  PY+   L+ GYD++  P LY +D +  + +   A  G G  F+ S++D  +   +++EE + L  K I
Sbjct:   15 GIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLL-ANIMNGAKYFPYLAWFLVGGYDEK--PKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAI 169          
BLAST of GO241583 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.867e-11
Identity = 47/171 (27.49%), Postives = 78/171 (45.61%), Query Frame = 2
Query:   65 GLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEE----AVDLVDKCILGDSIQAGG 565
            G+V     +L AD  A    +V+  N  KI  +D H  IA +G+ GD +     ++    LY  ++G  ++  A A      L  A R  PY+   L+ G+D++  P LY +D +  + +    A G G  F+ S++D  +   + V E    AV+ ++  I  D     G
Sbjct:   15 GIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGA-RMLPYLAWFLVGGFDEK--PRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDG 182          
The following BLAST results are available for this feature:
BLAST of GO241583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PSB2_PICGU1.728e-3243.98Probable proteasome subunit beta type-2 OS=Pichia ... [more]
PSB2_SCHPO2.280e-3242.07Probable proteasome subunit beta type-2 OS=Schizos... [more]
PSB2_DROME3.698e-2939.76Probable proteasome subunit beta type-2 OS=Drosoph... [more]
PSB2_YEAST1.977e-2837.58Proteasome component C11 OS=Saccharomyces cerevisi... [more]
PSB2_TRYBB5.570e-2339.02Proteasome subunit beta type-2 OS=Trypanosoma bruc... [more]
PSB2_ENCCU5.050e-1626.99Probable proteasome subunit beta type-2 OS=Encepha... [more]
PSB2_CAEEL1.624e-1431.14Proteasome subunit beta type-2 OS=Caenorhabditis e... [more]
PSMB_PYRFU1.986e-1228.48Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]
PSMB_PYRHO4.424e-1226.58Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]
PSMB_PYRAB2.867e-1127.49Proteasome subunit beta OS=Pyrococcus abyssi GN=ps... [more]

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Properties
Property NameValue
Genbank description231 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 348 5, mRNA sequence.