GO241538

Overview
NameGO241538
Unique NameGO241538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241538 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.531e-17
Identity = 61/154 (39.61%), Postives = 74/154 (48.05%), Query Frame = 3
Query:  138 LQDICVAINNPKDGVFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKALNKGDAFCVSNWFDSFPIQHWKNKCSCL--FCSHKP 593
            +QD CVA  N K      G  C  P   K  DF FS LG PGNT N +    T   V Q P LN LGIS  R+D AP G  P H HP ASE+L VL+G++  GF++S    N++  + L  G           F I   K   + L  F S  P
Sbjct:   19 VQDFCVA--NLKRAETPAGYPCIRPIHVKASDFVFS-LGTPGNTTNIISAAVTPGFVAQFPALNGLGISTARLDLAPKGVIPMHTHPGASEVLFVLDGSITAGFISS---ANSVYVQTLKPGQVMVFPQGLLHFQINAGKTPAAALVTFSSASP 166          
BLAST of GO241538 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.220e-16
Identity = 55/134 (41.04%), Postives = 71/134 (52.99%), Query Frame = 3
Query:  126 DPSPLQDICVAINNPKD--GVF-VNGKFCKDPKLAKPEDFFFSGLGKPGNTANRL-GVDET-DANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKALNKGDAF 512
            DP  L D CVA        G F +NG  C DP LA+ + F  S L +  N A  L G + T  +    +PG N  G++  RID AP G  PPH HPRASE  LVL G++ VGF  +   +  L ++ L  G+AF
Sbjct:   23 DPDLLFDYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSPAASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADT---SYRLYTQLLRAGEAF 153          

HSP 2 Score: 25.7942 bits (55), Expect = 1.220e-16
Identity = 13/29 (44.83%), Postives = 17/29 (58.62%), Query Frame = 1
Query:  511 FVFPIGLIHFQFNIG-KTNAVAYSALTSQ 594
            FVFP  ++HF +N+     AV  S L SQ
Sbjct:  153 FVFPRAMVHFLYNMDTAAPAVVLSGLNSQ 181          
BLAST of GO241538 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.397e-15
Identity = 44/92 (47.83%), Postives = 57/92 (61.96%), Query Frame = 3
Query:  231 DFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKALNKGD 506
            DF + GL   GNT+N +    T A V Q PG+N LGISA R+D A  G  P H HP ASE+L V +GT+  GF+TS   +NT+ ++ L  GD
Sbjct:   52 DFAYHGLAAAGNTSNLIKAAVTPAFVGQFPGVNGLGISAARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSS--SNTVYTRTLYAGD 141          
BLAST of GO241538 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.678e-14
Identity = 47/124 (37.90%), Postives = 62/124 (50.00%), Query Frame = 3
Query:  141 QDICVAINNPKDGVFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKALNKGDAF 512
            QD CVA N P      +G  C+        DF+   L +PG            A V+Q P +N LGISA R+D  P G  P H HP  SE+L VL+G L  GF++S   +N +  K ++KG  F
Sbjct:   29 QDFCVA-NLPLGADTPSGYQCRPAATVTAADFYSGALARPGILIRPFNTSLASAFVQQYPAVNGLGISASRVDILPGGVVPLHTHPAGSELLYVLDGALVAGFISSS--DNKVYYKEVSKGGMF 149          
BLAST of GO241538 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 8.561e-14
Identity = 43/133 (32.33%), Postives = 64/133 (48.12%), Query Frame = 3
Query:  126 DPSPLQDICVAIN-NPKDGVFVNGKFCKDPKLAKPEDFFFSGLGKPGNTANRLGVDE---TDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKALNKGDAF 512
            DP  L D  +  N NP +   + G F           F F+G  K  NT++    +    T A + + P LN   +S   + + P    PPH HPR++E+LLV++G L VGF+ +    N L ++ L  GD F
Sbjct:   27 DPDILTDYVIPANGNPMN---ITGDF-----------FTFTGFRKVFNTSSAPEPNSFTVTKATMAEFPALNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSVGFIDT---TNKLYTQDLAAGDMF 142          

HSP 2 Score: 36.5798 bits (83), Expect = 8.561e-14
Identity = 16/28 (57.14%), Postives = 20/28 (71.43%), Query Frame = 1
Query:  508 LFVFPIGLIHFQFNIGKTNAVAYSALTS 591
            +FVFP G++HFQFN G   A+A SA  S
Sbjct:  141 MFVFPKGMVHFQFNSGNQPAMALSAFGS 168          
BLAST of GO241538 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.171e-12
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 3
Query:  294 TDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKALNKGDAF 512
            T A + + P LN   +S   + Y P    PPH HPR++E+LL+++G L VGFV +    N L ++ L  GD F
Sbjct:   73 TKATMAEFPALNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSVGFVDT---TNKLYTQDLAAGDMF 142          

HSP 2 Score: 36.5798 bits (83), Expect = 1.171e-12
Identity = 16/28 (57.14%), Postives = 20/28 (71.43%), Query Frame = 1
Query:  508 LFVFPIGLIHFQFNIGKTNAVAYSALTS 591
            +FVFP G++HFQFN G   A+A SA  S
Sbjct:  141 MFVFPKGMVHFQFNSGNQPAMALSAFGS 168          
The following BLAST results are available for this feature:
BLAST of GO241538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GLP1_BRANA7.531e-1739.61Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
GL31_ORYSJ1.220e-1641.04Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GL814_ORYSJ5.397e-1547.83Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
GL813_ORYSJ2.678e-1437.90Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]
GL92_ORYSJ8.561e-1432.33Putative germin-like protein 9-2 OS=Oryza sativa s... [more]
GL93_ORYSJ1.171e-1239.73Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank description186 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 298 5, mRNA sequence.