GO241506 | Citrus Genome Database

Overview


Name	GO241506
Unique Name	GO241506
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1

Libraries


Library Name	Type
Cara cara navel orange fruit cDNA library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 5.891e-36
Identity = 64/131 (48.85%), Postives = 91/131 (69.47%), Query Frame = 1

Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACEYG 546
            +Y  LFK ++IGD+GVGK+C+L +F+D  F      TIG++F  + + +  K IKLQIWDTAGQE F +IT SYYRGA G +LVYDIT  ++F +++ WL +  +HAN ++  ML+GNKCD+  +R    G
Sbjct:    5 TYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKG 135

HSP 2 Score: 29.6462 bits (65), Expect = 5.891e-36
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 2

Query:  548 EGEQFAKEHGLIFMEASAK 604
            +GEQ A+EHG+ F E SAK
Sbjct:  136 KGEQIAREHGIRFFETSAK 154

[Close]

BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 5.891e-36
Identity = 64/131 (48.85%), Postives = 91/131 (69.47%), Query Frame = 1

Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACEYG 546
            +Y  LFK ++IGD+GVGK+C+L +F+D  F      TIG++F  + + +  K IKLQIWDTAGQE F +IT SYYRGA G +LVYDIT  ++F +++ WL +  +HAN ++  ML+GNKCD+  +R    G
Sbjct:    5 TYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKG 135

HSP 2 Score: 29.6462 bits (65), Expect = 5.891e-36
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 2

Query:  548 EGEQFAKEHGLIFMEASAK 604
            +GEQ A+EHG+ F E SAK
Sbjct:  136 KGEQIAREHGIRFFETSAK 154

[Close]

BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 5.891e-36
Identity = 64/131 (48.85%), Postives = 91/131 (69.47%), Query Frame = 1

Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACEYG 546
            +Y  LFK ++IGD+GVGK+C+L +F+D  F      TIG++F  + + +  K IKLQIWDTAGQE F +IT SYYRGA G +LVYDIT  ++F +++ WL +  +HAN ++  ML+GNKCD+  +R    G
Sbjct:    5 TYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKG 135

HSP 2 Score: 29.6462 bits (65), Expect = 5.891e-36
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 2

Query:  548 EGEQFAKEHGLIFMEASAK 604
            +GEQ A+EHG+ F E SAK
Sbjct:  136 KGEQIAREHGIRFFETSAK 154

[Close]

BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 5.891e-36
Identity = 64/131 (48.85%), Postives = 91/131 (69.47%), Query Frame = 1

Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACEYG 546
            +Y  LFK ++IGD+GVGK+C+L +F+D  F      TIG++F  + + +  K IKLQIWDTAGQE F +IT SYYRGA G +LVYDIT  ++F +++ WL +  +HAN ++  ML+GNKCD+  +R    G
Sbjct:    5 TYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKG 135

HSP 2 Score: 29.6462 bits (65), Expect = 5.891e-36
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 2

Query:  548 EGEQFAKEHGLIFMEASAK 604
            +GEQ A+EHG+ F E SAK
Sbjct:  136 KGEQIAREHGIRFFETSAK 154

[Close]

BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 7.660e-36
Identity = 67/132 (50.76%), Postives = 97/132 (73.48%), Query Frame = 1

Query:  148 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACEY 543
            N  Y YLFK ++IG++GVGKSCLLL+F+D  +   +  TIGV+F  + + +D K +KLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  WL++  ++A + +  +L+GNKCDL  +R  EY
Sbjct:    2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY 133

[Close]

BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.660e-36
Identity = 70/134 (52.24%), Postives = 95/134 (70.90%), Query Frame = 1

Query:  133 LINQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 534
            + N+ +  Y YLFK ++IGD+GVGKS +L +FT   F      TIGVEF  R + ++ K +K QIWDTAGQE +R+IT +YYRGA GALL YDIT+R+TF+++  WL + R H ++N+ I+L GNK DL H RA
Sbjct:    1 MANRVDHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRA 134

[Close]

BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 7.667e-36
Identity = 67/128 (52.34%), Postives = 94/128 (73.44%), Query Frame = 1

Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACE 540
            + YLFK ++IGD+ VGKSC LL+F D  +   +  TIGV+F  R + ++ K +KLQIWDTAGQE FR+IT SYYRGA G ++VYDIT  E+FN++  WL++  ++AN ++  +L+GNKCDLA  RA +
Sbjct:    5 FDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVD 132

HSP 2 Score: 23.483 bits (49), Expect = 7.667e-36
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 2

Query:  536 VSTEEGEQFAKEHGLIFMEASAK 604
            V T   + +A+E G+ F+E SAK
Sbjct:  131 VDTSVAQAYAQEVGIPFLETSAK 153

[Close]

BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 7.667e-36
Identity = 63/126 (50.00%), Postives = 94/126 (74.60%), Query Frame = 1

Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            +Y YLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+A++  M++GNK D+  +R
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKR 129

HSP 2 Score: 29.261 bits (64), Expect = 7.667e-36
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 2

Query:  536 VSTEEGEQFAKEHGLIFMEASAK 604
            VS E GE+ A ++G+ FME SAK
Sbjct:  131 VSKERGEKLALDYGIKFMETSAK 153

[Close]

BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RABQ_DICDI (Ras-related protein RabQ OS=Dictyostelium discoideum GN=rabQ PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 7.669e-36
Identity = 71/123 (57.72%), Postives = 88/123 (71.54%), Query Frame = 1

Query:  163 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            Y  K I+ G   VGKS LLLQF +K F    D TIGVEF  R I ID+  IKL+IWDTAGQESFRSIT +YYRGA  ALL YDIT+R++F +L+ W+++ RQ ++ N+ I LIGNKCD   +R
Sbjct:    4 YHLKCIVTGPPFVGKSSLLLQFCEKEFSFEMDTTIGVEFQTRSILIDSSKIKLEIWDTAGQESFRSITTNYYRGAHIALLCYDITKRQSFQYLSGWMDEVRQMSSPNIVIALIGNKCDCKDKR 126

HSP 2 Score: 29.261 bits (64), Expect = 7.669e-36
Identity = 12/23 (52.17%), Postives = 18/23 (78.26%), Query Frame = 2

Query:  536 VSTEEGEQFAKEHGLIFMEASAK 604
            ++TEEG + AKE+ ++F E SAK
Sbjct:  128 ITTEEGAKNAKENDILFFETSAK 150

[Close]

BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 9.987e-36
Identity = 63/126 (50.00%), Postives = 91/126 (72.22%), Query Frame = 1

Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            +Y YLFK ++IGD+GVGK+C L +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F ++ +W+ +  +HA+ ++  M++GNKCD   +R
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKR 129

HSP 2 Score: 28.4906 bits (62), Expect = 9.987e-36
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 2

Query:  536 VSTEEGEQFAKEHGLIFMEASAK 604
            VS E+GE+ A   G+ FME SAK
Sbjct:  131 VSREQGEKLAASFGIKFMETSAK 153

The following BLAST results are available for this feature:

BLAST of GO241506 vs. ExPASy Swiss-Prot

BLAST of GO241506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RAB10_PONAB	5.891e-36	48.85	Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1...	[more]
RAB10_MOUSE	5.891e-36	48.85	Ras-related protein Rab-10 OS=Mus musculus GN=Rab1...	[more]
RAB10_HUMAN	5.891e-36	48.85	Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1...	[more]
RAB10_CANFA	5.891e-36	48.85	Ras-related protein Rab-10 OS=Canis familiaris GN=...	[more]
YPT1_YEAST	7.660e-36	50.76	GTP-binding protein YPT1 OS=Saccharomyces cerevisi...	[more]
RB11A_TOBAC	7.660e-36	52.24	Ras-related protein Rab11A OS=Nicotiana tabacum GN...	[more]
YPTM1_MAIZE	7.667e-36	52.34	GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=...	[more]
RAB8A_PONAB	7.667e-36	50.00	Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8...	[more]
RABQ_DICDI	7.669e-36	57.72	Ras-related protein RabQ OS=Dictyostelium discoide...	[more]
RAB8A_CHICK	9.987e-36	50.00	Ras-related protein Rab-8A OS=Gallus gallus GN=RAB...	[more]

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Properties


Property Name	Value
Genbank description	154 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 261 5, mRNA sequence.