GO241506

Overview
NameGO241506
Unique NameGO241506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.887e-34
Identity = 67/131 (51.15%), Postives = 95/131 (72.52%), Query Frame = 1
Query:  148 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACE 540
            N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E++ ++  WL++  ++A+ N+  +L+GNK DL  ++  +
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVD 132          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.887e-34
Identity = 67/131 (51.15%), Postives = 95/131 (72.52%), Query Frame = 1
Query:  148 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACE 540
            N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E++ ++  WL++  ++A+ N+  +L+GNK DL  ++  +
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVD 132          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.887e-34
Identity = 67/131 (51.15%), Postives = 95/131 (72.52%), Query Frame = 1
Query:  148 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACE 540
            N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E++ ++  WL++  ++A+ N+  +L+GNK DL  ++  +
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVD 132          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.380e-34
Identity = 68/126 (53.97%), Postives = 91/126 (72.22%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRR 531
            Y YLFK I+IGD+G GKS LLL+F D  +   +  TIGV+F  + + IDN  IKLQIWDTAGQE FR+IT +YYRGA G + VYD+T + +F+H+  +WL+D  ++A +N+  +LIGNK DLA  R
Sbjct:    4 YDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLAESR 129          

HSP 2 Score: 25.0238 bits (53), Expect = 2.380e-34
Identity = 10/24 (41.67%), Postives = 18/24 (75.00%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAKT 607
            VS +E +  A+++ + ++EASAKT
Sbjct:  131 VSADEAKHVAEQNNMNYIEASAKT 154          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.464e-34
Identity = 65/132 (49.24%), Postives = 94/132 (71.21%), Query Frame = 1
Query:  148 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACEY 543
            N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R   ++ K +KLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +++FN++  WL++  ++A   +  +L+GNK D+  ++  EY
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEY 133          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.464e-34
Identity = 66/131 (50.38%), Postives = 95/131 (72.52%), Query Frame = 1
Query:  148 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACE 540
            N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE FR++T SYYRGA G ++VYD+T +E++ ++  WL++  ++A+ N+  +L+GNK DL  ++  +
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVD 132          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.105e-34
Identity = 67/125 (53.60%), Postives = 88/125 (70.40%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            Y YLFK ++IGD+ VGKSCLLL+F D  +   +  TIGV+F  R I  D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD T  E+FN++  WL +  ++AN ++  +LIGNK D+   +
Sbjct:    5 YDYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESK 129          

HSP 2 Score: 26.9498 bits (58), Expect = 3.105e-34
Identity = 13/23 (56.52%), Postives = 15/23 (65.22%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAK 604
            VSTE G   A E G+ F+E SAK
Sbjct:  131 VSTETGRALADELGIPFLETSAK 153          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.037e-34
Identity = 67/127 (52.76%), Postives = 88/127 (69.29%), Query Frame = 1
Query:  151 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            + Y YL K ++IGD+GVGKS LL ++    F      TIGVEF  + + IDNK IKLQ+WDTAGQE + SIT SYY+GA GAL+VY+I  R +FN+L  WL+  R++A+ +  IML+GNK DL   R
Sbjct:    6 IEYDYLCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYR 132          

HSP 2 Score: 28.8758 bits (63), Expect = 4.037e-34
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASA 601
            VST EG+QFA++H + F+E SA
Sbjct:  134 VSTLEGKQFAEKHYMQFIETSA 155          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 6.856e-34
Identity = 61/124 (49.19%), Postives = 87/124 (70.16%), Query Frame = 1
Query:  145 TNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 516
            ++ +Y  + K +++GD+GVGKSCLLL+F + +F P    TIG++F  R I    K IKLQ+WDTAGQE FR+IT +YYRGA G +L+YD+T   +F ++ +W +   QHAN +  I L+GNKCD
Sbjct:    7 SSRAYDMIMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCD 130          

HSP 2 Score: 25.409 bits (54), Expect = 6.856e-34
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAKT 607
            VS E+G++ A +  + F+EASAK+
Sbjct:  137 VSKEQGQELAAKLNVPFLEASAKS 160          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.597e-33
Identity = 65/122 (53.28%), Postives = 89/122 (72.95%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 522
            Y  L K +++GD+GVGKSCLLL+FTD  F      TIG++F  + + +D K +KLQIWDTAGQE FR+IT +YYRGA G +LVYDIT   +FN++ +W+ +  QHA+ N+  +L+GNK DLA
Sbjct:   10 YDALIKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLA 131          
The following BLAST results are available for this feature:
BLAST of GO241506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1B_MOUSE1.887e-3451.15Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1B_HUMAN1.887e-3451.15Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_BOVIN1.887e-3451.15Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
RAB1_THEPA2.380e-3453.97Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
YPT1_SCHPO2.464e-3449.24GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RAB1B_RAT2.464e-3450.38Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RABD1_ARATH3.105e-3453.60Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RB11B_DICDI4.037e-3452.76Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
SEC4_CANAL6.856e-3449.19Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
YPTV2_VOLCA1.597e-3353.28GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]

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Properties
Property NameValue
Genbank description154 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 261 5, mRNA sequence.