GO241506

Overview
NameGO241506
Unique NameGO241506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 7.398e-33
Identity = 64/120 (53.33%), Postives = 82/120 (68.33%), Query Frame = 1
Query:  172 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDLAHR 528
            K +IIG++GVGKS LLL+FTD  F P    TIGV+F  + I ID    KL IWDTAGQE FR++T SYYRGA G +LVYD+T+R+TF  L +WL +   +   N +  ML+GNK D  +R
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTKRDTFTKLENWLNELETYCTRNDLVKMLVGNKIDKDNR 129          

HSP 2 Score: 31.9574 bits (71), Expect = 7.398e-33
Identity = 13/24 (54.17%), Postives = 19/24 (79.17%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAKT 607
            V   EG +FA++H ++F+EASAKT
Sbjct:  131 VDRNEGLKFARKHSMLFIEASAKT 154          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB39A_MOUSE (Ras-related protein Rab-39A OS=Mus musculus GN=Rab39 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.035e-32
Identity = 69/131 (52.67%), Postives = 93/131 (70.99%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----DLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRR 531
            + Y F+ I+IGD+ VGKSCLL +FT  RF  +H    D T+GV+F +R++ I+  K IKLQ+WDTAGQE FRSITRSYYR + G  LV+DIT R +F H+  WLE+A+ H     +  +L+G+KCDLA +R
Sbjct:    5 WIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLHSPACDPTVGVDFFSRLLEIEPGKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMHVQPFQIVFLLVGHKCDLASQR 135          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.035e-32
Identity = 66/131 (50.38%), Postives = 93/131 (70.99%), Query Frame = 1
Query:  148 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACE 540
            N  Y  LFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  + I +D K IKLQIWDTAGQE F +IT SYYRGA G L+VYD+T +E++ ++  WL++  +HA+ N+  +L+GNK DL  ++  +
Sbjct:    2 NPGYDCLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVD 132          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB19_BOVIN (Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.035e-32
Identity = 62/126 (49.21%), Postives = 87/126 (69.05%), Query Frame = 1
Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            ++ YLFK I+IGD+ VGK+C++  F    +      TIGV+F  R + ID K +K+Q+WDTAGQE FR+IT+SYYR A  A++ YD+TRR TF  +  W+ +  ++  AN+ IMLIGNKCDL  +R
Sbjct:   13 NFDYLFKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRALEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCDLWEKR 138          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 1.253e-32
Identity = 58/127 (45.67%), Postives = 88/127 (69.29%), Query Frame = 1
Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            SY    K +++GDTGVGK+C L+QF D  F       T+G++F  +++T+D   +KLQIWDTAGQE FRS+T +YYR A   LL+YDIT + +F+++ +WL +  ++A  ++ IML+GNK D++  R
Sbjct:   25 SYDLTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSER 151          

HSP 2 Score: 31.5722 bits (70), Expect = 1.253e-32
Identity = 13/27 (48.15%), Postives = 20/27 (74.07%), Query Frame = 2
Query:  527 EGXVSTEEGEQFAKEHGLIFMEASAKT 607
            E  + +E+GE  A+E+G+ F+E SAKT
Sbjct:  150 ERVIRSEDGETLAREYGVPFLETSAKT 176          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.254e-32
Identity = 61/131 (46.56%), Postives = 89/131 (67.94%), Query Frame = 1
Query:  139 NQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            N+T+  Y ++FK ++IG++GVGK+ LL +FT   F      TIGVEF  R + +    +K QIWDTAG E +R+IT +YYRGA GALLV+D+T+ +T+  +  WL++   HA A + +ML+GNK DL+  R
Sbjct:    3 NRTDEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAR 133          

HSP 2 Score: 27.335 bits (59), Expect = 1.254e-32
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASA 601
            V TEE   FA+ +GL+F+E SA
Sbjct:  135 VPTEEACMFAENNGLLFLETSA 156          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.254e-32
Identity = 61/131 (46.56%), Postives = 87/131 (66.41%), Query Frame = 1
Query:  139 NQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            N T   Y ++FK ++IG++GVGK+ LL +FT   F      TIGVEF  R + +    +K QIWDTAG E +R+IT +YYRGA GALLV+D+T+ +T+  +  WL++   HA A + +ML+GNK DL+  R
Sbjct:    3 NGTEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAR 133          

HSP 2 Score: 28.8758 bits (63), Expect = 1.254e-32
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASA 601
            V TEE   FA+ +GL+F+E SA
Sbjct:  135 VPTEEARMFAENNGLLFLETSA 156          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.352e-32
Identity = 67/126 (53.17%), Postives = 90/126 (71.43%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHRR 531
            Y YLFK I+IGD+G GKS LLL+F D  +   +  TIGV+F  + + IDN  IKLQIWDTAGQE FR+IT +YYRGA G + VYD+T + +F+H+  +WL+D  ++A +N+  +LIGNK DL   R
Sbjct:    4 YDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLVDSR 129          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.352e-32
Identity = 62/126 (49.21%), Postives = 87/126 (69.05%), Query Frame = 1
Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            ++ YLFK I+IGD+ VGK+C++  F    +      TIGV+F  R + ID K +K+Q+WDTAGQE FR+IT+SYYR A  A++ YD+TRR TF  +  W+ +  ++  AN+ IMLIGNKCDL  +R
Sbjct:   13 NFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCDLWEKR 138          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.627e-32
Identity = 57/127 (44.88%), Postives = 89/127 (70.08%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 534
            Y   FK +++GD+GVGK+CLL++F D  F     + T+G++F  +++ +D   +KLQIWDTAGQE FRS+T +YYR A   LL+YD+T + +F+ + +WL + ++HA  ++ +ML+GNK D A  RA
Sbjct:   60 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKVDSAQERA 186          

HSP 2 Score: 32.3426 bits (72), Expect = 1.627e-32
Identity = 15/27 (55.56%), Postives = 19/27 (70.37%), Query Frame = 2
Query:  527 EGXVSTEEGEQFAKEHGLIFMEASAKT 607
            E  V  E+ E+ AK++GL FME SAKT
Sbjct:  184 ERAVKREDAEKLAKDYGLPFMETSAKT 210          
The following BLAST results are available for this feature:
BLAST of GO241506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB18B_DANRE7.398e-3353.33Ras-related protein Rab-18-B OS=Danio rerio GN=rab... [more]
RB39A_MOUSE1.035e-3252.67Ras-related protein Rab-39A OS=Mus musculus GN=Rab... [more]
RAB1C_HUMAN1.035e-3250.38Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RAB19_BOVIN1.035e-3249.21Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 ... [more]
RAB37_HUMAN1.253e-3245.67Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]
RAB25_MOUSE1.254e-3246.56Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
RAB25_HUMAN1.254e-3246.56Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
RAB1_THEAN1.352e-3253.17Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
RAB19_HUMAN1.352e-3249.21Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]
RAB26_BOVIN1.627e-3244.88Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]

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Properties
Property NameValue
Genbank description154 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 261 5, mRNA sequence.