GO241506

Overview
NameGO241506
Unique NameGO241506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB15_HUMAN (Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.351e-31
Identity = 57/125 (45.60%), Postives = 83/125 (66.40%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            Y  LF+ ++IGD+GVGK+CLL +FTD  F   H  TIGV+F  + I +D   +++QIWDTAGQE +++IT+ YYR A G  LVYDI+   ++ H+  W+ D  ++A   +  +LIGNK D   +R
Sbjct:    5 YDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKR 129          

HSP 2 Score: 29.261 bits (64), Expect = 1.351e-31
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAKT 607
            V  E+G+Q AKE+G+ F E SA T
Sbjct:  131 VGREQGQQLAKEYGMDFYETSACT 154          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB39B_MOUSE (Ras-related protein Rab-39B OS=Mus musculus GN=Rab39b PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 65/127 (51.18%), Postives = 92/127 (72.44%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRR 531
            + Y F+ I+IGD+ VGKSCL+ +FT+ RF  V D T+GV+F +R++ I+  K IKLQIWDTAGQE FRSITR+YYR + G LL++DIT R +F ++  WLE+ + H     +  +L+G+KCDL  +R
Sbjct:    5 WLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQR 131          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB39B_HUMAN (Ras-related protein Rab-39B OS=Homo sapiens GN=RAB39B PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 65/127 (51.18%), Postives = 92/127 (72.44%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRR 531
            + Y F+ I+IGD+ VGKSCL+ +FT+ RF  V D T+GV+F +R++ I+  K IKLQIWDTAGQE FRSITR+YYR + G LL++DIT R +F ++  WLE+ + H     +  +L+G+KCDL  +R
Sbjct:    5 WLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQR 131          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB39B_BOVIN (Ras-related protein Rab-39B OS=Bos taurus GN=RAB39B PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 65/127 (51.18%), Postives = 92/127 (72.44%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRR 531
            + Y F+ I+IGD+ VGKSCL+ +FT+ RF  V D T+GV+F +R++ I+  K IKLQIWDTAGQE FRSITR+YYR + G LL++DIT R +F ++  WLE+ + H     +  +L+G+KCDL  +R
Sbjct:    5 WLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQR 131          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB18A_LYMST (Ras-related protein Rab-18A OS=Lymnaea stagnalis GN=RAB18A PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.762e-31
Identity = 60/127 (47.24%), Postives = 85/127 (66.93%), Query Frame = 1
Query:  172 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRACEYGG 549
            K +IIG++GVGKS LLL+FT+  F P    TIGV+F  + +T++    KL IWDTAGQE FR++T SYYRGA G +LVYD++ +++FN L +WL +    +   +M  ML+GNK D A+    +  G
Sbjct:   11 KILIIGESGVGKSSLLLRFTEDTFDPEQAATIGVDFKVKTLTVEGNKTKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVSSKQSFNKLDAWLNELETFSTKHDMVKMLVGNKIDRANHEVTKDEG 137          

HSP 2 Score: 32.3426 bits (72), Expect = 1.762e-31
Identity = 13/24 (54.17%), Postives = 21/24 (87.50%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAKT 607
            V+ +EG +FA++H ++F+EASAKT
Sbjct:  132 VTKDEGLKFARKHHMLFIEASAKT 155          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB43_RAT (Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 63/125 (50.40%), Postives = 87/125 (69.60%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            Y +LFK +++GD  VGK+C++ +F    F      TIGV+F  + + I  K +KLQIWDTAGQE FR+IT+SYYR A GA+L YDI++R TF  +  W+ED R++A +N+  +LIGNK DLA  R
Sbjct:   13 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADLR 137          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB43_MOUSE (Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.550e-31
Identity = 63/125 (50.40%), Postives = 87/125 (69.60%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            Y +LFK +++GD  VGK+C++ +F    F      TIGV+F  + + I  K +KLQIWDTAGQE FR+IT+SYYR A GA+L YDI++R TF  +  W+ED R++A +N+  +LIGNK DLA  R
Sbjct:   13 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADFR 137          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB19_XENTR (Ras-related protein Rab-19 OS=Xenopus tropicalis GN=rab19 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.550e-31
Identity = 62/125 (49.60%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            + +LFK I+IGD+ VGK+C++ +F    F      TIGV+F  R + I+ K +K+Q+WDTAGQE FR+IT+SYYR A GA++ YDITRR++F  +  W+ +A ++  AN+ +MLIGNK DLA +R
Sbjct:   12 FDFLFKIILIGDSNVGKTCVVHRFQSGVFAHNQQNTIGVDFTVRNMNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAEKYGAANLMMMLIGNKSDLAEKR 136          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB19_XENLA (Ras-related protein Rab-19 OS=Xenopus laevis GN=rab19 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.550e-31
Identity = 61/125 (48.80%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            + +LFK I+IGD+ VGK+C++ +F    F      TIGV+F  R + I+ K +K+Q+WDTAGQE FR+IT+SYYR A GA++ YDITRR++F  +  W+ +A ++  AN+ +ML+GNK DLA +R
Sbjct:   12 FDFLFKIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAGKYGAANLMLMLMGNKSDLAEKR 136          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB15_BOVIN (Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.985e-31
Identity = 57/125 (45.60%), Postives = 83/125 (66.40%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            Y  LF+ ++IGD+GVGK+CLL +FTD  F   H  TIGV+F  + I +D   +++QIWDTAGQE +++IT+ YYR A G  LVYDI+   ++ H+  W+ D  ++A   +  +LIGNK D   +R
Sbjct:    5 YDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKR 129          

HSP 2 Score: 28.1054 bits (61), Expect = 2.985e-31
Identity = 12/24 (50.00%), Postives = 17/24 (70.83%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAKT 607
            V  E+G+Q A+E+G+ F E SA T
Sbjct:  131 VGREQGQQLAREYGMDFYETSACT 154          
The following BLAST results are available for this feature:
BLAST of GO241506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB15_HUMAN1.351e-3145.60Ras-related protein Rab-15 OS=Homo sapiens GN=RAB1... [more]
RB39B_MOUSE1.495e-3151.18Ras-related protein Rab-39B OS=Mus musculus GN=Rab... [more]
RB39B_HUMAN1.495e-3151.18Ras-related protein Rab-39B OS=Homo sapiens GN=RAB... [more]
RB39B_BOVIN1.495e-3151.18Ras-related protein Rab-39B OS=Bos taurus GN=RAB39... [more]
RB18A_LYMST1.762e-3147.24Ras-related protein Rab-18A OS=Lymnaea stagnalis G... [more]
RAB43_RAT1.952e-3150.40Ras-related protein Rab-43 OS=Rattus norvegicus GN... [more]
RAB43_MOUSE2.550e-3150.40Ras-related protein Rab-43 OS=Mus musculus GN=Rab4... [more]
RAB19_XENTR2.550e-3149.60Ras-related protein Rab-19 OS=Xenopus tropicalis G... [more]
RAB19_XENLA2.550e-3148.80Ras-related protein Rab-19 OS=Xenopus laevis GN=ra... [more]
RAB15_BOVIN2.985e-3145.60Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 ... [more]

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Properties
Property NameValue
Genbank description154 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 261 5, mRNA sequence.