GO241506

Overview
NameGO241506
Unique NameGO241506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.330e-31
Identity = 65/123 (52.85%), Postives = 84/123 (68.29%), Query Frame = 1
Query:  163 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            YLFK +IIGD+ VGKS LL +FT   F      TIGV+FG + I IDNK I  Q WDTAGQE FR++T  YYRGA GA++VYDIT + +F ++  WL + R+ A  ++ IM++GNK DL   R
Sbjct:    9 YLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSR 131          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.330e-31
Identity = 62/125 (49.60%), Postives = 87/125 (69.60%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            Y +LFK +++GD  VGK+C++ +F    F      TIGV+F  + + I  K +KLQIWDTAGQE FR+IT+SYYR A GA+L YDIT+R +F  +  W+ED R++A +N+  +LIGNK DL+  R
Sbjct:   15 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR 139          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB37_MOUSE (Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 3.882e-31
Identity = 55/127 (43.31%), Postives = 87/127 (68.50%), Query Frame = 1
Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            +Y    K +++GD+GVGK+C L+QF D  F       T+G++   +++T+D   +KLQIWDTAGQE FRS+T +YYR A   LL+YDIT + +F+++ +WL +  ++A  ++ IML+GNK D++  R
Sbjct:   25 NYDLTGKVMLLGDSGVGKTCFLIQFKDGAFLSGTFIATVGIDSRNKVVTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADVSSER 151          

HSP 2 Score: 32.7278 bits (73), Expect = 3.882e-31
Identity = 14/27 (51.85%), Postives = 20/27 (74.07%), Query Frame = 2
Query:  527 EGXVSTEEGEQFAKEHGLIFMEASAKT 607
            E  + +E+GE  A+E+G+ FME SAKT
Sbjct:  150 ERVIRSEDGETLAREYGVPFMETSAKT 176          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB19_RAT (Ras-related protein Rab-19 OS=Rattus norvegicus GN=Rab19 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.350e-31
Identity = 61/123 (49.59%), Postives = 84/123 (68.29%), Query Frame = 1
Query:  163 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            YLFK I+IGD+ VGK+C++  F    +      TIGV+F  R + ID K +K+Q+WDTAGQE FR+IT+SYYR A  A++ YD+TRR TF  +  W+ +  ++  AN+ IMLIGNK DL  +R
Sbjct:   16 YLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKR 138          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB19_MOUSE (Ras-related protein Rab-19 OS=Mus musculus GN=Rab19 PE=2 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 4.350e-31
Identity = 61/123 (49.59%), Postives = 84/123 (68.29%), Query Frame = 1
Query:  163 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            YLFK I+IGD+ VGK+C++  F    +      TIGV+F  R + ID K +K+Q+WDTAGQE FR+IT+SYYR A  A++ YD+TRR TF  +  W+ +  ++  AN+ IMLIGNK DL  +R
Sbjct:   16 YLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKR 138          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: YPT4_SCHPO (GTP-binding protein ypt4 OS=Schizosaccharomyces pombe GN=ypt4 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.681e-31
Identity = 63/130 (48.46%), Postives = 91/130 (70.00%), Query Frame = 1
Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI----DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            SY YL K ++ G +G GKSCLL +F   ++      T+G++F +R+I++      K IKLQIWDTAGQE FRS+ R+YYRGAAGA+LVYD+T +++F  L+SWL D R  A + + ++L G+K DL ++R
Sbjct:    5 SYDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDLQNQR 134          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RABF1_DICDI (Ras-related protein RabF1 OS=Dictyostelium discoideum GN=rabF1-1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.682e-30
Identity = 59/128 (46.09%), Postives = 92/128 (71.88%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACE 540
            Y +LFK+++ GD+GVGK+ +L + TD  F   H +TIG+EF  + + I+ KPIKLQIWDTAG++ FR +  S+YRG  G ++VYD+T + +F ++ SW+ED R++AN N+  ++IGNK DL  ++  +
Sbjct:    5 YEHLFKFVLAGDSGVGKTSILFRITDDTFTETH-ITIGIEFKIKTVYIEGKPIKLQIWDTAGEKRFR-VHNSHYRGCHGVIIVYDVTDQRSFENVPSWIEDIRRYANENVIKIIIGNKNDLVSQKVVD 130          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB3B_HUMAN (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 4.180e-30
Identity = 54/129 (41.86%), Postives = 85/129 (65.89%), Query Frame = 1
Query:  145 TNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            ++ ++ Y+FK +IIG++ VGK+  L ++ D  F P    T+G++F  + +    K +KLQIWDTAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++L+GNKCD+   R
Sbjct:   15 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEER 143          

HSP 2 Score: 26.5646 bits (57), Expect = 4.180e-30
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 2
Query:  527 EGXVSTEEGEQFAKEHGLIFMEASAK 604
            E  V TE+G+  A++ G  F EASAK
Sbjct:  142 ERVVPTEKGQLLAEQLGFDFFEASAK 167          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.087e-30
Identity = 54/129 (41.86%), Postives = 85/129 (65.89%), Query Frame = 1
Query:  145 TNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            ++ ++ Y+FK +IIG++ VGK+  L ++ D  F P    T+G++F  + +    K +KLQIWDTAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++L+GNKCD+   R
Sbjct:   15 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEER 143          

HSP 2 Score: 25.7942 bits (55), Expect = 7.087e-30
Identity = 13/26 (50.00%), Postives = 16/26 (61.54%), Query Frame = 2
Query:  527 EGXVSTEEGEQFAKEHGLIFMEASAK 604
            E  V TE+G   A++ G  F EASAK
Sbjct:  142 ERVVPTEKGRLLAEQLGFDFFEASAK 167          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.087e-30
Identity = 54/129 (41.86%), Postives = 85/129 (65.89%), Query Frame = 1
Query:  145 TNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            ++ ++ Y+FK +IIG++ VGK+  L ++ D  F P    T+G++F  + +    K +KLQIWDTAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++L+GNKCD+   R
Sbjct:   15 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEER 143          

HSP 2 Score: 25.7942 bits (55), Expect = 7.087e-30
Identity = 13/26 (50.00%), Postives = 16/26 (61.54%), Query Frame = 2
Query:  527 EGXVSTEEGEQFAKEHGLIFMEASAK 604
            E  V TE+G   A++ G  F EASAK
Sbjct:  142 ERVVPTEKGRLLAEQLGFDFFEASAK 167          
The following BLAST results are available for this feature:
BLAST of GO241506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11C_DICDI3.330e-3152.85Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RAB43_HUMAN3.330e-3149.60Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
RAB37_MOUSE3.882e-3143.31Ras-related protein Rab-37 OS=Mus musculus GN=Rab3... [more]
RAB19_RAT4.350e-3149.59Ras-related protein Rab-19 OS=Rattus norvegicus GN... [more]
RAB19_MOUSE4.350e-3149.59Ras-related protein Rab-19 OS=Mus musculus GN=Rab1... [more]
YPT4_SCHPO5.681e-3148.46GTP-binding protein ypt4 OS=Schizosaccharomyces po... [more]
RABF1_DICDI3.682e-3046.09Ras-related protein RabF1 OS=Dictyostelium discoid... [more]
RAB3B_HUMAN4.180e-3041.86Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]
RAB3B_MOUSE7.087e-3041.86Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU7.087e-3041.86Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]

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Properties
Property NameValue
Genbank description154 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 261 5, mRNA sequence.