GO241506

Overview
NameGO241506
Unique NameGO241506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB3B_BOVIN (Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.087e-30
Identity = 54/129 (41.86%), Postives = 85/129 (65.89%), Query Frame = 1
Query:  145 TNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            ++ ++ Y+FK +IIG++ VGK+  L ++ D  F P    T+G++F  + +    K +KLQIWDTAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++L+GNKCD+   R
Sbjct:   15 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEER 143          

HSP 2 Score: 25.7942 bits (55), Expect = 7.087e-30
Identity = 13/26 (50.00%), Postives = 16/26 (61.54%), Query Frame = 2
Query:  527 EGXVSTEEGEQFAKEHGLIFMEASAK 604
            E  V TE+G   A++ G  F EASAK
Sbjct:  142 ERVVPTEKGRLLAEQLGFDFFEASAK 167          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB3B_RAT (Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 9.228e-30
Identity = 54/129 (41.86%), Postives = 85/129 (65.89%), Query Frame = 1
Query:  145 TNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            ++ ++ Y+FK +IIG++ VGK+  L ++ D  F P    T+G++F  + +    K +KLQIWDTAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++L+GNKCD+   R
Sbjct:   15 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEER 143          

HSP 2 Score: 25.409 bits (54), Expect = 9.228e-30
Identity = 12/26 (46.15%), Postives = 16/26 (61.54%), Query Frame = 2
Query:  527 EGXVSTEEGEQFAKEHGLIFMEASAK 604
            E  + TE+G   A++ G  F EASAK
Sbjct:  142 ERVIPTEKGRLLAEQLGFDFFEASAK 167          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.652e-29
Identity = 54/128 (42.19%), Postives = 84/128 (65.62%), Query Frame = 1
Query:  148 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            + ++ Y+FK ++IG++ VGK+  L ++ D  F P    T+G++F  + +   +K IKLQIWDTAGQE +R+IT +YYRGA G LL+YDI  +E+F  +  W    + ++  N  ++L+GNKCDL   R
Sbjct:   16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDER 143          

HSP 2 Score: 26.9498 bits (58), Expect = 2.652e-29
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 2
Query:  527 EGXVSTEEGEQFAKEHGLIFMEASAK 604
            E  VS E+G++ A + G  F EASAK
Sbjct:  142 ERVVSAEDGQRLAGDLGFEFFEASAK 167          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.461e-29
Identity = 62/128 (48.44%), Postives = 88/128 (68.75%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACE 540
            Y +LFK +IIGD+GVGKS LLL+F D  F   +  TIGV+F  R + I+ + +KLQIWDTAGQE FR+IT +YYRG  G ++VYD+T  E+F ++  WL +  Q+ + ++  +L+GNK D   R+  E
Sbjct:    5 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVE 131          

HSP 2 Score: 22.3274 bits (46), Expect = 3.461e-29
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAK 604
            V TE+  +FA + G+   E SAK
Sbjct:  130 VETEDAYKFAGQMGIQLFETSAK 152          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.461e-29
Identity = 62/128 (48.44%), Postives = 88/128 (68.75%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACE 540
            Y +LFK +IIGD+GVGKS LLL+F D  F   +  TIGV+F  R + I+ + +KLQIWDTAGQE FR+IT +YYRG  G ++VYD+T  E+F ++  WL +  Q+ + ++  +L+GNK D   R+  E
Sbjct:    5 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVE 131          

HSP 2 Score: 22.3274 bits (46), Expect = 3.461e-29
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAK 604
            V TE+  +FA + G+   E SAK
Sbjct:  130 VETEDAYKFAGQMGIQLFETSAK 152          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.461e-29
Identity = 62/128 (48.44%), Postives = 88/128 (68.75%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACE 540
            Y +LFK +IIGD+GVGKS LLL+F D  F   +  TIGV+F  R + I+ + +KLQIWDTAGQE FR+IT +YYRG  G ++VYD+T  E+F ++  WL +  Q+ + ++  +L+GNK D   R+  E
Sbjct:    5 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVE 131          

HSP 2 Score: 22.3274 bits (46), Expect = 3.461e-29
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAK 604
            V TE+  +FA + G+   E SAK
Sbjct:  130 VETEDAYKFAGQMGIQLFETSAK 152          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.494e-29
Identity = 54/131 (41.22%), Postives = 86/131 (65.65%), Query Frame = 1
Query:  139 NQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            + ++ ++ Y+FK +IIG++ VGK+  L ++ D  F      T+G++F  + +  + K IKLQIWDTAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++L+GNKCD+   R
Sbjct:   21 DSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 151          

HSP 2 Score: 25.409 bits (54), Expect = 4.494e-29
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2
Query:  527 EGXVSTEEGEQFAKEHGLIFMEASAK 604
            E  +STE G+   ++ G  F E SAK
Sbjct:  150 ERVISTERGQHLGEQLGFEFFETSAK 175          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 4.494e-29
Identity = 54/131 (41.22%), Postives = 86/131 (65.65%), Query Frame = 1
Query:  139 NQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            + ++ ++ Y+FK +IIG++ VGK+  L ++ D  F      T+G++F  + +  + K IKLQIWDTAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W    + ++  N  ++L+GNKCD+   R
Sbjct:   21 DSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 151          

HSP 2 Score: 25.409 bits (54), Expect = 4.494e-29
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2
Query:  527 EGXVSTEEGEQFAKEHGLIFMEASAK 604
            E  +STE G+   ++ G  F E SAK
Sbjct:  150 ERVISTERGQHLGEQLGFEFFETSAK 175          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.500e-29
Identity = 53/125 (42.40%), Postives = 84/125 (67.20%), Query Frame = 1
Query:  169 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACEY 543
            FK +++G++ VGKS L+L+F   +F    + TIG  F  + + +D+  +K +IWDTAGQE + S+   YYRGA  A++VYDIT +ETF    +W+++ ++ A+ ++ I L GNK DLA++R  EY
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEY 145          

HSP 2 Score: 28.4906 bits (62), Expect = 4.500e-29
Identity = 12/24 (50.00%), Postives = 17/24 (70.83%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAKT 607
            V  EE + +A ++ L+FME SAKT
Sbjct:  143 VEYEEAQAYADDNSLLFMETSAKT 166          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.500e-29
Identity = 53/125 (42.40%), Postives = 84/125 (67.20%), Query Frame = 1
Query:  169 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACEY 543
            FK +++G++ VGKS L+L+F   +F    + TIG  F  + + +D+  +K +IWDTAGQE + S+   YYRGA  A++VYDIT +ETF    +W+++ ++ A+ ++ I L GNK DLA++R  EY
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEY 145          

HSP 2 Score: 28.4906 bits (62), Expect = 4.500e-29
Identity = 12/24 (50.00%), Postives = 17/24 (70.83%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAKT 607
            V  EE + +A ++ L+FME SAKT
Sbjct:  143 VEYEEAQAYADDNSLLFMETSAKT 166          
The following BLAST results are available for this feature:
BLAST of GO241506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3B_BOVIN7.087e-3041.86Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B ... [more]
RAB3B_RAT9.228e-3041.86Ras-related protein Rab-3B OS=Rattus norvegicus GN... [more]
RAB3D_RAT2.652e-2942.19GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
RAB35_RAT3.461e-2948.44Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]
RAB35_MOUSE3.461e-2948.44Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]
RAB35_HUMAN3.461e-2948.44Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3... [more]
RAB3C_HUMAN4.494e-2941.22Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3... [more]
RAB3C_BOVIN4.494e-2941.22Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]
RAB5B_PONAB4.500e-2942.40Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5... [more]
RAB5B_MOUSE4.500e-2942.40Ras-related protein Rab-5B OS=Mus musculus GN=Rab5... [more]

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Properties
Property NameValue
Genbank description154 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 261 5, mRNA sequence.