GO241506

Overview
NameGO241506
Unique NameGO241506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB4A_RAT (Ras-related protein Rab-4A OS=Rattus norvegicus GN=Rab4a PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.142e-39
Identity = 77/122 (63.11%), Postives = 98/122 (80.33%), Query Frame = 1
Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 519
            +Y +LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG+++I +  K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR  A+ N+ I+L GNK DL
Sbjct:    4 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 125          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.142e-39
Identity = 77/122 (63.11%), Postives = 98/122 (80.33%), Query Frame = 1
Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 519
            +Y +LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG+++I +  K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR  A+ N+ I+L GNK DL
Sbjct:    4 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 125          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB4A_BOVIN (Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.142e-39
Identity = 77/122 (63.11%), Postives = 98/122 (80.33%), Query Frame = 1
Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 519
            +Y +LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG+++I +  K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR  A+ N+ I+L GNK DL
Sbjct:    4 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 125          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.544e-39
Identity = 76/122 (62.30%), Postives = 96/122 (78.69%), Query Frame = 1
Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 519
            +Y +LFK+++IG  G GKSCLL QF + +F+   + TIGVEFG+R++ +  K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR  A+ N+ I+L GNK DL
Sbjct:    4 TYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILCGNKKDL 125          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.572e-39
Identity = 70/128 (54.69%), Postives = 94/128 (73.44%), Query Frame = 1
Query:  148 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            N    Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + ID+K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R+TF+H+  WLE+ R HA+ N+ I+LIGNKCDL ++R
Sbjct:   11 NAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQR 138          

HSP 2 Score: 28.4906 bits (62), Expect = 3.572e-39
Identity = 12/28 (42.86%), Postives = 20/28 (71.43%), Query Frame = 2
Query:  518 LLIEGXVSTEEGEQFAKEHGLIFMEASA 601
            L+ +  V TE+ ++FA++ GL F+E SA
Sbjct:  134 LVNQRDVPTEDAKEFAEKEGLFFLETSA 161          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB4A_MOUSE (Ras-related protein Rab-4A OS=Mus musculus GN=Rab4a PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.339e-39
Identity = 75/122 (61.48%), Postives = 98/122 (80.33%), Query Frame = 1
Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 519
            +Y +LFK+++IG+ G GKSCLL QF +K+F+   + TIG+EFG+++I +  K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR  A+ N+ ++L GNK DL
Sbjct:    4 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGMEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILCGNKKDL 125          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.905e-39
Identity = 72/128 (56.25%), Postives = 92/128 (71.88%), Query Frame = 1
Query:  142 QTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 525
            +T+  Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  + + +D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TRR TF + A WL++ R H + N+ +MLIGNK DL H
Sbjct:    5 RTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRH 132          

HSP 2 Score: 27.7202 bits (60), Expect = 7.905e-39
Identity = 12/22 (54.55%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASA 601
            V TE+G+ FA+   L FME SA
Sbjct:  136 VPTEDGKSFAERESLYFMETSA 157          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.030e-38
Identity = 72/134 (53.73%), Postives = 97/134 (72.39%), Query Frame = 1
Query:  133 LINQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 534
            + N+ +  Y YLFK ++IGD+GVGKS +L +FT   F      TIGVEF  R + ++ K +K QIWDTAGQE +R+IT +YYRGA GALLVYDIT+R+TF+++  WL + R HA++N+ IM+ GNK DL H RA
Sbjct:    1 MANRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRA 134          

HSP 2 Score: 26.1794 bits (56), Expect = 1.030e-38
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASA 601
            VS E+G+  A++ GL F+E SA
Sbjct:  135 VSEEDGQALAEKEGLSFLETSA 156          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.281e-38
Identity = 69/130 (53.08%), Postives = 95/130 (73.08%), Query Frame = 1
Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACEY 543
            SY YL K ++IGD+GVGKSCLLL+F++  F P    TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G LL+YD+T +++F+++ +W  +  QHA+ N+  +LIGNKCD   +R   +
Sbjct:    5 SYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSF 134          

HSP 2 Score: 29.261 bits (64), Expect = 2.281e-38
Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAKT 607
            VS E+G+  A E G+ F+EASAKT
Sbjct:  132 VSFEQGQALADELGVKFLEASAKT 155          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.971e-38
Identity = 72/132 (54.55%), Postives = 95/132 (71.97%), Query Frame = 1
Query:  148 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACEY 543
            N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +L+GNKCDLA  R   Y
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSY 133          

HSP 2 Score: 24.6386 bits (52), Expect = 2.971e-38
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAK 604
            VS E G+  A E G+ F+E SAK
Sbjct:  131 VSYEAGKALADEIGIPFLETSAK 153          
The following BLAST results are available for this feature:
BLAST of GO241506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB4A_RAT1.142e-3963.11Ras-related protein Rab-4A OS=Rattus norvegicus GN... [more]
RAB4A_HUMAN1.142e-3963.11Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4... [more]
RAB4A_BOVIN1.142e-3963.11Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A ... [more]
RAB4B_DANRE2.544e-3962.30Ras-related protein Rab-4B OS=Danio rerio GN=rab4b... [more]
RB11A_LOTJA3.572e-3954.69Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RAB4A_MOUSE4.339e-3961.48Ras-related protein Rab-4A OS=Mus musculus GN=Rab4... [more]
RB11D_LOTJA7.905e-3956.25Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RB2BV_BETVU1.030e-3853.73Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
YPT2_SCHPO2.281e-3853.08GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RIC1_ORYSJ2.971e-3854.55Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank description154 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 261 5, mRNA sequence.