GO241506

Overview
NameGO241506
Unique NameGO241506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 5.036e-38
Identity = 70/123 (56.91%), Postives = 90/123 (73.17%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 525
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +D+K IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++ +WL++ R H + N+ +ML+GNK DL H
Sbjct:   10 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRH 132          

HSP 2 Score: 26.1794 bits (56), Expect = 5.036e-38
Identity = 11/22 (50.00%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASA 601
            V TE+ + FA++  L FME SA
Sbjct:  136 VQTEDAKSFAEKESLYFMETSA 157          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 6.561e-38
Identity = 71/123 (57.72%), Postives = 89/123 (72.36%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 525
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  + + IDNK IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  T+ ++  WL++ R H + N+ +MLIGNK DL H
Sbjct:   10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRH 132          

HSP 2 Score: 26.5646 bits (57), Expect = 6.561e-38
Identity = 12/22 (54.55%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASA 601
            VST+E +  A+  GL FME SA
Sbjct:  136 VSTDEAKGLAEREGLYFMETSA 157          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.570e-38
Identity = 65/132 (49.24%), Postives = 97/132 (73.48%), Query Frame = 1
Query:  136 INQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            ++ +  +Y  L K ++IGD+GVGKSCLLL+F + +F P    TIG++F  R I I N+ +KLQ+WDTAGQE FR+IT +YYRGA G LLVYD+T  ++FN++ +W ++ + +AN  + ++L+GNKCDL  +R
Sbjct:    1 MSHSQRTYDLLIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKR 132          

HSP 2 Score: 30.4166 bits (67), Expect = 6.570e-38
Identity = 13/24 (54.17%), Postives = 19/24 (79.17%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAKT 607
            VSTE+G+  A + G+ F+EAS+KT
Sbjct:  134 VSTEQGQALADKFGIPFLEASSKT 157          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 8.184e-38
Identity = 71/136 (52.21%), Postives = 100/136 (73.53%), Query Frame = 1
Query:  136 INQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACEY 543
            ++  N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNKCDL  ++  +Y
Sbjct:    1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY 136          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 8.184e-38
Identity = 71/136 (52.21%), Postives = 100/136 (73.53%), Query Frame = 1
Query:  136 INQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACEY 543
            ++  N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNKCDL  ++  +Y
Sbjct:    1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY 136          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 8.184e-38
Identity = 71/136 (52.21%), Postives = 100/136 (73.53%), Query Frame = 1
Query:  136 INQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACEY 543
            ++  N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNKCDL  ++  +Y
Sbjct:    1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY 136          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 8.184e-38
Identity = 71/136 (52.21%), Postives = 100/136 (73.53%), Query Frame = 1
Query:  136 INQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACEY 543
            ++  N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNKCDL  ++  +Y
Sbjct:    1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY 136          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 8.547e-38
Identity = 73/126 (57.94%), Postives = 91/126 (72.22%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 534
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK DL H RA
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA 133          

HSP 2 Score: 25.7942 bits (55), Expect = 8.547e-38
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASA 601
            V T+E   FA+++GL F+E SA
Sbjct:  134 VPTDEARAFAEKNGLSFIETSA 155          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 8.547e-38
Identity = 73/126 (57.94%), Postives = 91/126 (72.22%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 534
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK DL H RA
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA 133          

HSP 2 Score: 25.7942 bits (55), Expect = 8.547e-38
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASA 601
            V T+E   FA+++GL F+E SA
Sbjct:  134 VPTDEARAFAEKNGLSFIETSA 155          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 8.547e-38
Identity = 73/126 (57.94%), Postives = 91/126 (72.22%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 534
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK DL H RA
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA 133          

HSP 2 Score: 25.7942 bits (55), Expect = 8.547e-38
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASA 601
            V T+E   FA+++GL F+E SA
Sbjct:  134 VPTDEARAFAEKNGLSFIETSA 155          
The following BLAST results are available for this feature:
BLAST of GO241506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAA1C_ARATH5.036e-3856.91Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
YPT3_NICPL6.561e-3857.72Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RYL1_YARLI6.570e-3849.24Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB1A_RAT8.184e-3852.21Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE8.184e-3852.21Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN8.184e-3852.21Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA8.184e-3852.21Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
RB11A_RAT8.547e-3857.94Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT8.547e-3857.94Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB8.547e-3857.94Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]

Pages

back to top
Properties
Property NameValue
Genbank description154 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 261 5, mRNA sequence.