GO241506

Overview
NameGO241506
Unique NameGO241506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAS_CARAU (Ras-like protein (Fragment) OS=Carassius auratus PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.436e-14
Identity = 39/121 (32.23%), Postives = 66/121 (54.55%), Query Frame = 1
Query:  169 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHR 528
            +K +++G  GVGKS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDL  R
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSR 123          

HSP 2 Score: 26.5646 bits (57), Expect = 5.436e-14
Identity = 10/24 (41.67%), Postives = 17/24 (70.83%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAKT 607
            V T++ +  A+ +G+ F+E SAKT
Sbjct:  125 VDTKQAQDLARSYGIPFIETSAKT 148          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAN_VICFA (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  133 LINQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            L NQ  + Y   FK +I+GD G GK+  + +     F+  ++ TIGVE        +   I+   WDTAGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+ +R+
Sbjct:    3 LPNQQTVDYPS-FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ 133          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAN_DROME (GTP-binding nuclear protein Ran OS=Drosophila melanogaster GN=ran PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14
Identity = 38/121 (31.40%), Postives = 66/121 (54.55%), Query Frame = 1
Query:  169 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            FK +++GD G GK+  + +     F+  +  T+GVE    +   +   I+  +WDTAGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R+
Sbjct:   11 FKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRK 130          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RANB1_TOBAC (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  133 LINQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            L NQ  + Y   FK +I+GD G GK+  + +     F+  ++ TIGVE        +   I+   WDTAGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+ +R+
Sbjct:    3 LPNQQTVDYPS-FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ 133          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAN3_ARATH (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  133 LINQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            L NQ  + Y   FK +I+GD G GK+  + +     F+  ++ TIGVE        +   I+   WDTAGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+ +R+
Sbjct:    3 LPNQQTVDYPS-FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ 133          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAN2_SOLLC (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  133 LINQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            L NQ  + Y   FK +I+GD G GK+  + +     F+  ++ TIGVE        +   I+   WDTAGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+ +R+
Sbjct:    3 LPNQQTVDYPS-FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ 133          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  133 LINQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            L NQ  + Y   FK +I+GD G GK+  + +     F+  ++ TIGVE        +   I+   WDTAGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+ +R+
Sbjct:    3 LPNQQTVDYPS-FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ 133          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAN1_SOLLC (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  133 LINQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            L NQ  + Y   FK +I+GD G GK+  + +     F+  ++ TIGVE        +   I+   WDTAGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+ +R+
Sbjct:    3 LPNQQTVDYPS-FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ 133          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSJ (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. japonica GN=RAN1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  133 LINQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            L NQ  + Y   FK +I+GD G GK+  + +     F+  ++ TIGVE        +   I+   WDTAGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+ +R+
Sbjct:    3 LPNQQTVDYPS-FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ 133          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSI (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. indica GN=RAN1 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  133 LINQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            L NQ  + Y   FK +I+GD G GK+  + +     F+  ++ TIGVE        +   I+   WDTAGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+ +R+
Sbjct:    3 LPNQQTVDYPS-FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ 133          
The following BLAST results are available for this feature:
BLAST of GO241506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS_CARAU5.436e-1432.23Ras-like protein (Fragment) OS=Carassius auratus P... [more]
RAN_VICFA6.310e-1433.08GTP-binding nuclear protein Ran/TC4 OS=Vicia faba ... [more]
RAN_DROME6.310e-1431.40GTP-binding nuclear protein Ran OS=Drosophila mela... [more]
RANB1_TOBAC6.310e-1433.08GTP-binding nuclear protein Ran-B1 OS=Nicotiana ta... [more]
RAN3_ARATH6.310e-1433.08GTP-binding nuclear protein Ran-3 OS=Arabidopsis t... [more]
RAN2_SOLLC6.310e-1433.08GTP-binding nuclear protein Ran2 OS=Solanum lycope... [more]
RAN2_ARATH6.310e-1433.08GTP-binding nuclear protein Ran-2 OS=Arabidopsis t... [more]
RAN1_SOLLC6.310e-1433.08GTP-binding nuclear protein Ran1 OS=Solanum lycope... [more]
RAN1_ORYSJ6.310e-1433.08GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]
RAN1_ORYSI6.310e-1433.08GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank description154 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 261 5, mRNA sequence.