GO241506 | Citrus Genome Database

Overview


Name	GO241506
Unique Name	GO241506
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1

Libraries


Library Name	Type
Cara cara navel orange fruit cDNA library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2195	contig	Csv1_Contig2195:31..638.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 3.210e-37
Identity = 64/126 (50.79%), Postives = 95/126 (75.40%), Query Frame = 1

Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            +Y YLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+A++  M++GNKCD+  +R
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 129

HSP 2 Score: 29.261 bits (64), Expect = 3.210e-37
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 2

Query:  536 VSTEEGEQFAKEHGLIFMEASAK 604
            VS E GE+ A ++G+ FME SAK
Sbjct:  131 VSKERGEKLALDYGIKFMETSAK 153

BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.210e-37
Identity = 64/126 (50.79%), Postives = 95/126 (75.40%), Query Frame = 1

Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            +Y YLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+A++  M++GNKCD+  +R
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 129

HSP 2 Score: 29.261 bits (64), Expect = 3.210e-37
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 2

Query:  536 VSTEEGEQFAKEHGLIFMEASAK 604
            VS E GE+ A ++G+ FME SAK
Sbjct:  131 VSKERGEKLALDYGIKFMETSAK 153

BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.210e-37
Identity = 64/126 (50.79%), Postives = 95/126 (75.40%), Query Frame = 1

Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            +Y YLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+A++  M++GNKCD+  +R
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 129

HSP 2 Score: 29.261 bits (64), Expect = 3.210e-37
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 2

Query:  536 VSTEEGEQFAKEHGLIFMEASAK 604
            VS E GE+ A ++G+ FME SAK
Sbjct:  131 VSKERGEKLALDYGIKFMETSAK 153

BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.210e-37
Identity = 64/126 (50.79%), Postives = 95/126 (75.40%), Query Frame = 1

Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            +Y YLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+A++  M++GNKCD+  +R
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 129

HSP 2 Score: 29.261 bits (64), Expect = 3.210e-37
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 2

Query:  536 VSTEEGEQFAKEHGLIFMEASAK 604
            VS E GE+ A ++G+ FME SAK
Sbjct:  131 VSKERGEKLALDYGIKFMETSAK 153

BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.210e-37
Identity = 64/126 (50.79%), Postives = 95/126 (75.40%), Query Frame = 1

Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            +Y YLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+A++  M++GNKCD+  +R
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 129

HSP 2 Score: 29.261 bits (64), Expect = 3.210e-37
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 2

Query:  536 VSTEEGEQFAKEHGLIFMEASAK 604
            VS E GE+ A ++G+ FME SAK
Sbjct:  131 VSKERGEKLALDYGIKFMETSAK 153

BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 152.14 bits (383), Expect = 4.178e-37
Identity = 73/126 (57.94%), Postives = 91/126 (72.22%), Query Frame = 1

Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 534
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK DL H RA
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA 133

HSP 2 Score: 23.483 bits (49), Expect = 4.178e-37
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = 2

Query:  536 VSTEEGEQFAKEHGLIFMEASA 601
            V T+E   FA+++ L F+E SA
Sbjct:  134 VPTDEARAFAEKNNLSFIETSA 155

BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 4.178e-37
Identity = 73/126 (57.94%), Postives = 91/126 (72.22%), Query Frame = 1

Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 534
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK DL H RA
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA 133

HSP 2 Score: 23.483 bits (49), Expect = 4.178e-37
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = 2

Query:  536 VSTEEGEQFAKEHGLIFMEASA 601
            V T+E   FA+++ L F+E SA
Sbjct:  134 VPTDEARAFAEKNNLSFIETSA 155

BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 152.14 bits (383), Expect = 4.178e-37
Identity = 73/126 (57.94%), Postives = 91/126 (72.22%), Query Frame = 1

Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 534
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK DL H RA
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA 133

HSP 2 Score: 23.483 bits (49), Expect = 4.178e-37
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = 2

Query:  536 VSTEEGEQFAKEHGLIFMEASA 601
            V T+E   FA+++ L F+E SA
Sbjct:  134 VPTDEARAFAEKNNLSFIETSA 155

BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 4.178e-37
Identity = 73/126 (57.94%), Postives = 91/126 (72.22%), Query Frame = 1

Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 534
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA++N+ IML+GNK DL H RA
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA 133

HSP 2 Score: 23.483 bits (49), Expect = 4.178e-37
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = 2

Query:  536 VSTEEGEQFAKEHGLIFMEASA 601
            V T+E   FA+++ L F+E SA
Sbjct:  134 VPTDEARAFAEKNNLSFIETSA 155

BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.182e-37
Identity = 64/126 (50.79%), Postives = 95/126 (75.40%), Query Frame = 1

Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            +Y YLFK ++IGD+GVGK+CLL +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA++++  M++GNKCD+  +R
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKR 129

HSP 2 Score: 28.1054 bits (61), Expect = 4.182e-37
Identity = 12/24 (50.00%), Postives = 18/24 (75.00%), Query Frame = 2

Query:  536 VSTEEGEQFAKEHGLIFMEASAKT 607
            VS E GE+ A ++G+ F+E SAK+
Sbjct:  131 VSKERGEKLAIDYGIKFLETSAKS 154

The following BLAST results are available for this feature:

BLAST of GO241506 vs. ExPASy Swiss-Prot

BLAST of GO241506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RAB8A_MOUSE	3.210e-37	50.79	Ras-related protein Rab-8A OS=Mus musculus GN=Rab8...	[more]
RAB8A_MACFA	3.210e-37	50.79	Ras-related protein Rab-8A OS=Macaca fascicularis ...	[more]
RAB8A_HUMAN	3.210e-37	50.79	Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8...	[more]
RAB8A_CANFA	3.210e-37	50.79	Ras-related protein Rab-8A OS=Canis familiaris GN=...	[more]
RAB8A_BOVIN	3.210e-37	50.79	Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ...	[more]
RB11B_RAT	4.178e-37	57.94	Ras-related protein Rab-11B OS=Rattus norvegicus G...	[more]
RB11B_MOUSE	4.178e-37	57.94	Ras-related protein Rab-11B OS=Mus musculus GN=Rab...	[more]
RB11B_HUMAN	4.178e-37	57.94	Ras-related protein Rab-11B OS=Homo sapiens GN=RAB...	[more]
RB11B_BOVIN	4.178e-37	57.94	Ras-related protein Rab-11B OS=Bos taurus GN=RAB11...	[more]
RAB8B_RAT	4.182e-37	50.79	Ras-related protein Rab-8B OS=Rattus norvegicus GN...	[more]

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Properties


Property Name	Value
Genbank description	154 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 261 5, mRNA sequence.