GO241506

Overview
NameGO241506
Unique NameGO241506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2195 contig Csv1_Contig2195:31..638. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.182e-37
Identity = 64/126 (50.79%), Postives = 95/126 (75.40%), Query Frame = 1
Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            +Y YLFK ++IGD+GVGK+CLL +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA++++  M++GNKCD+  +R
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKR 129          

HSP 2 Score: 28.1054 bits (61), Expect = 4.182e-37
Identity = 12/24 (50.00%), Postives = 18/24 (75.00%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAKT 607
            VS E GE+ A ++G+ F+E SAK+
Sbjct:  131 VSKERGEKLAIDYGIKFLETSAKS 154          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.182e-37
Identity = 64/126 (50.79%), Postives = 95/126 (75.40%), Query Frame = 1
Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            +Y YLFK ++IGD+GVGK+CLL +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA++++  M++GNKCD+  +R
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKR 129          

HSP 2 Score: 28.1054 bits (61), Expect = 4.182e-37
Identity = 12/24 (50.00%), Postives = 18/24 (75.00%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAKT 607
            VS E GE+ A ++G+ F+E SAK+
Sbjct:  131 VSKERGEKLAIDYGIKFLETSAKS 154          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 4.182e-37
Identity = 64/126 (50.79%), Postives = 95/126 (75.40%), Query Frame = 1
Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            +Y YLFK ++IGD+GVGK+CLL +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA++++  M++GNKCD+  +R
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKR 129          

HSP 2 Score: 28.1054 bits (61), Expect = 4.182e-37
Identity = 12/24 (50.00%), Postives = 18/24 (75.00%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAKT 607
            VS E GE+ A ++G+ F+E SAK+
Sbjct:  131 VSKERGEKLAIDYGIKFLETSAKS 154          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 5.305e-37
Identity = 70/136 (51.47%), Postives = 99/136 (72.79%), Query Frame = 1
Query:  136 INQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACEY 543
            ++  N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T + +FN++  WL++  ++A+ N+  +L+GNKCDL  ++  +Y
Sbjct:    1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY 136          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.928e-37
Identity = 74/125 (59.20%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDIT+  TF ++  WL++ R HA++N+ IML+GNK DL H R
Sbjct:    9 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLR 133          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 9.238e-37
Identity = 73/126 (57.94%), Postives = 90/126 (71.43%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 534
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDTAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL++ R HA+ N+ IML+GNK DL H RA
Sbjct:    8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDLRHLRA 133          

HSP 2 Score: 23.483 bits (49), Expect = 9.238e-37
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASA 601
            V T+E   FA+++ L F+E SA
Sbjct:  134 VPTDEARAFAEKNNLSFIETSA 155          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 9.251e-37
Identity = 70/128 (54.69%), Postives = 93/128 (72.66%), Query Frame = 1
Query:  148 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A  N+  +L+GNK DL  +R
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKR 129          

HSP 2 Score: 26.1794 bits (56), Expect = 9.251e-37
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAK 604
            VST+  ++FA+  G+ F+E SAK
Sbjct:  131 VSTDAAKEFAESLGIEFLETSAK 153          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.203e-36
Identity = 67/124 (54.03%), Postives = 90/124 (72.58%), Query Frame = 1
Query:  163 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 534
            Y+FK ++IGD+ VGK+ +L +F    F      TIGVEF  R + I +K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R+TF+H+  WLE+ R HA+ N+ IML GNK DL  +RA
Sbjct:   14 YVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRA 137          

HSP 2 Score: 28.1054 bits (61), Expect = 1.203e-36
Identity = 11/22 (50.00%), Postives = 17/22 (77.27%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASA 601
            V TE+ ++FA++ GL F+E SA
Sbjct:  138 VPTEDAKEFAQKEGLFFLETSA 159          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 1.205e-36
Identity = 71/132 (53.79%), Postives = 94/132 (71.21%), Query Frame = 1
Query:  148 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACEY 543
            N  Y YLFK ++IGD+GVGKSCLLL+F+D  +   +  TIGV+F  R +  D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T  E+FN++  WL +  ++A+ N+  +L+GNK DL   RA  Y
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPY 133          

HSP 2 Score: 23.483 bits (49), Expect = 1.205e-36
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 2
Query:  545 EEGEQFAKEHGLIFMEASAK 604
            E  + FA E G+ FME SAK
Sbjct:  134 ETAKAFADEIGIPFMETSAK 153          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.543e-36
Identity = 70/132 (53.03%), Postives = 96/132 (72.73%), Query Frame = 1
Query:  148 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACEY 543
            N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +L+GNK DL  ++  EY
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEY 133          
The following BLAST results are available for this feature:
BLAST of GO241506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8B_PONAB4.182e-3750.79Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE4.182e-3750.79Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_HUMAN4.182e-3750.79Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB1A_PIG5.305e-3751.47Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
YPTC6_CHLRE6.928e-3759.20Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11B_DISOM9.238e-3757.94Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
YPT1_PHYIN9.251e-3754.69Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RB11C_TOBAC1.203e-3654.03Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RBD2A_ARATH1.205e-3653.79Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
YPTC1_CHLRE1.543e-3653.03GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank description154 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 261 5, mRNA sequence.