GO241506

Overview
NameGO241506
Unique NameGO241506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2195 contig Csv1_Contig2195:31..638. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.543e-36
Identity = 71/134 (52.99%), Postives = 97/134 (72.39%), Query Frame = 1
Query:  133 LINQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 534
            + ++ +  Y YLFK ++IGD+GVGKS +L +FT   F      TIGVEF  R + ++ K +K QIWDTAGQE +R+IT +YYRGA GALLVYDIT+R+TF+++  WL + R HA++N+ IM+ GNK DL H RA
Sbjct:    1 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRA 134          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.043e-36
Identity = 62/126 (49.21%), Postives = 94/126 (74.60%), Query Frame = 1
Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            +Y YLFK ++IGD+GVGK+CLL +F++  F      TIG++F  R + +D K IKLQIWDTAGQE FR+IT +YYRGA G + VYDIT  ++F+++ +W+ +  +HA++++  M++GNKCD+  +R
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKR 129          

HSP 2 Score: 28.1054 bits (61), Expect = 2.043e-36
Identity = 12/24 (50.00%), Postives = 18/24 (75.00%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAKT 607
            VS E GE+ A ++G+ F+E SAK+
Sbjct:  131 VSKERGEKLAIDYGIKFLETSAKS 154          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.045e-36
Identity = 67/129 (51.94%), Postives = 94/129 (72.87%), Query Frame = 1
Query:  154 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACE 540
            +Y +L K ++IGD+GVGKSCLLL+F+D  F P    TIG++F  R I ++ K IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T  ++F  + +W+ +  QHA+ ++  MLIGNKCD+  ++  +
Sbjct:   11 AYDFLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVD 139          

HSP 2 Score: 25.0238 bits (53), Expect = 2.045e-36
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAK 604
            V +  G+  A E+G+ F+E SAK
Sbjct:  138 VDSSRGKSLADEYGIKFLETSAK 160          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.660e-36
Identity = 67/121 (55.37%), Postives = 89/121 (73.55%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 519
            Y YL K ++IGD+GVGKSCLLL+F+D  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QHA+ N+  +L+GNK D+
Sbjct:   12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132          

HSP 2 Score: 27.335 bits (59), Expect = 2.660e-36
Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAKT 607
            V T +G+  A E+G+ F E SAKT
Sbjct:  139 VPTAKGQALADEYGIKFFETSAKT 162          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.661e-36
Identity = 67/121 (55.37%), Postives = 89/121 (73.55%), Query Frame = 1
Query:  157 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 519
            Y YL K ++IGD+GVGKSCLLL+F+D  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QHA+ N+  +L+GNK D+
Sbjct:   12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132          

HSP 2 Score: 27.335 bits (59), Expect = 2.661e-36
Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAKT 607
            V T +G+  A E+G+ F E SAKT
Sbjct:  139 VPTAKGQALADEYGIKFFETSAKT 162          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.664e-36
Identity = 68/124 (54.84%), Postives = 91/124 (73.39%), Query Frame = 1
Query:  148 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 519
            N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +L+GNK DL
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDL 125          

HSP 2 Score: 27.7202 bits (60), Expect = 2.664e-36
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAK 604
            V+TE  + FA E G+ FME SAK
Sbjct:  131 VATETAKAFADEMGIPFMETSAK 153          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 3.463e-36
Identity = 69/123 (56.10%), Postives = 90/123 (73.17%), Query Frame = 1
Query:  163 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 531
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  R + ID + +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R++F+H+A WLE+ R HA+ N+ IMLIGNK DL   R
Sbjct:   17 YVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLR 139          

HSP 2 Score: 26.5646 bits (57), Expect = 3.463e-36
Identity = 11/22 (50.00%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASA 601
            V TE+ ++FA+   L FME SA
Sbjct:  141 VPTEDAKEFAERENLFFMETSA 162          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.466e-36
Identity = 68/124 (54.84%), Postives = 86/124 (69.35%), Query Frame = 1
Query:  163 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 534
            YLFK +IIGD+ VGKS LL ++    F P    TIGVEF  + + ID K +K QIWDTAGQE FR++T +YYRGA GAL+VYDITR  TF ++  WL++   H++  +  MLIGNKCDL   RA
Sbjct:   11 YLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRA 134          

HSP 2 Score: 29.261 bits (64), Expect = 3.466e-36
Identity = 13/22 (59.09%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASA 601
            VS EEG+  A+  GL FME SA
Sbjct:  135 VSVEEGKSLAESEGLFFMETSA 156          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.471e-36
Identity = 69/132 (52.27%), Postives = 96/132 (72.73%), Query Frame = 1
Query:  148 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACEY 543
            N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +L+GNK DL  ++  +Y
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDY 133          

HSP 2 Score: 21.9422 bits (45), Expect = 3.471e-36
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 2
Query:  536 VSTEEGEQFAKEHGLIFMEASAK 604
            V  +  + FA E G+ F+E SAK
Sbjct:  131 VDYQAAKAFADEIGIPFLETSAK 153          
BLAST of GO241506 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.491e-36
Identity = 69/132 (52.27%), Postives = 97/132 (73.48%), Query Frame = 1
Query:  148 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRACEY 543
            N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNK DL  ++  ++
Sbjct:    5 NPDYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDF 136          
The following BLAST results are available for this feature:
BLAST of GO241506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11C_LOTJA1.543e-3652.99Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RAB8_DISOM2.043e-3649.21Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB8B_DICDI2.045e-3651.94Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
ARA3_ARATH2.660e-3655.37Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RB1BV_BETVU2.661e-3655.37Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
YPTM2_MAIZE2.664e-3654.84GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RGP1_ORYSJ3.463e-3656.10Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
ARA4_ARATH3.466e-3654.84Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
YPTV1_VOLCA3.471e-3652.27GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RAB1A_LYMST4.491e-3652.27Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]

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Properties
Property NameValue
Genbank description154 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 261 5, mRNA sequence.