GO241450

Overview
NameGO241450
Unique NameGO241450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241450 vs. ExPASy Swiss-Prot
Match: SPS_MAIZE (Sucrose-phosphate synthase OS=Zea mays GN=SPS PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.536e-12
Identity = 44/158 (27.85%), Postives = 77/158 (48.73%), Query Frame = 3
Query:  117 LSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVXXXXXXXXXXXXXEMHELMKTYKLDGQFRWIAAQQIGHVMRALSLYSRHQSALCSLLFMKLFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFXIDPYHPDQAAELM 590
            L++  KP++ +++R D  KN+T LV+ +G+   LREL NL ++ G  D               + +L+  Y L G   +        V     L ++ +    +   ++ FGLT++EA   GLP  AT +GGP +I     +G  +DP+  +  A+ +
Sbjct:  483 LTNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDDMSAGNASVLTTVLKLIDKYDLYGSVAFPKHHNQADVPEIYRLAAKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDITNALNNGLLVDPHDQNAIADAL 640          
BLAST of GO241450 vs. ExPASy Swiss-Prot
Match: SPS_ORYSJ (Probable sucrose-phosphate synthase OS=Oryza sativa subsp. japonica GN=SPS1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.312e-12
Identity = 44/158 (27.85%), Postives = 77/158 (48.73%), Query Frame = 3
Query:  117 LSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVXXXXXXXXXXXXXEMHELMKTYKLDGQFRWIAAQQIGHVMRALSLYSRHQSALCSLLFMKLFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFXIDPYHPDQAAELM 590
            L++  KP++ +++R D  KN+T LV+ +G+   LREL NL+++ G  D               + +L+  Y L G   +    +   V     L  + +    +   ++ FGLT++EA   GLP  AT +GGP +I     +G  +DP+     A+ +
Sbjct:  497 LTNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLILIMGNRDDIDEMSAGNASVLTTVLKLIDKYDLYGSVAFPKHHKQSDVPEIYRLTGKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDIKNALNNGLLVDPHDQHAIADAL 654          
BLAST of GO241450 vs. ExPASy Swiss-Prot
Match: SPS_ORYSI (Probable sucrose-phosphate synthase OS=Oryza sativa subsp. indica GN=SPS1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.312e-12
Identity = 44/158 (27.85%), Postives = 77/158 (48.73%), Query Frame = 3
Query:  117 LSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVXXXXXXXXXXXXXEMHELMKTYKLDGQFRWIAAQQIGHVMRALSLYSRHQSALCSLLFMKLFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFXIDPYHPDQAAELM 590
            L++  KP++ +++R D  KN+T LV+ +G+   LREL NL+++ G  D               + +L+  Y L G   +    +   V     L  + +    +   ++ FGLT++EA   GLP  AT +GGP +I     +G  +DP+     A+ +
Sbjct:  497 LTNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLILIMGNRDDIDEMSAGNASVLTTVLKLIDKYDLYGSVAFPKHHKQSDVPEIYRLTGKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDIKNALNNGLLVDPHDQHAIADAL 654          
The following BLAST results are available for this feature:
BLAST of GO241450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
SPS_MAIZE2.536e-1227.85Sucrose-phosphate synthase OS=Zea mays GN=SPS PE=1... [more]
SPS_ORYSJ3.312e-1227.85Probable sucrose-phosphate synthase OS=Oryza sativ... [more]
SPS_ORYSI3.312e-1227.85Probable sucrose-phosphate synthase OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank description98 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 182 5, mRNA sequence.