GO241419

Overview
NameGO241419
Unique NameGO241419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241419_ssr92 microsatellite GO241419_ssr92:92..119. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7410 contig Csv1_Contig7410:107..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: HPCC_ECOLX (5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase OS=Escherichia coli GN=hpcC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.235e-11
Identity = 40/93 (43.01%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            ING+ V  A    F   +P T EV+A+VA G   +I +AVATA++AF +  W  +   ER+R+M R  DLI++N+ E+AA+ET + G P  Q+
Sbjct:    8 INGKNV--AGNDYFLTTNPATGEVLADVASGGEAEINQAVATAKEAFPK--WANLPMKERARLMRRLGDLIDQNVPEIAAMETADTGLPIHQT 96          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: ABDH_SHIF8 (Gamma-aminobutyraldehyde dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=ydcW PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.235e-11
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  332 LINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKP 601
            LING+ V +  G+  PVY+P T +V+  +AE  AE +  AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP
Sbjct:    6 LINGELV-SGEGEKQPVYNPATGDVLLEIAEVSAEQVDAAVRAADAAFAE--WGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKP 92          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: ABDH_ECO27 (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ydcW PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  332 LINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKP 601
            LING+ V +  G+  PVY+P   +V+  +AE  AE +  AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP
Sbjct:    6 LINGELV-SGEGEKQPVYNPAMGDVLLEIAEASAEQVNAAVRAADAAFAE--WGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKP 92          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: DMPC_PSEUF (2-hydroxymuconic semialdehyde dehydrogenase OS=Pseudomonas sp. (strain CF600) GN=dmpC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKP 601
            ING FV +ASG+TF   +P   +VIA V E    ++  AV  AR A  +GPW KM+  ER+ I+ R AD I    +E    E  + GKP
Sbjct:    8 INGAFVGSASGRTFEDVNPANGQVIARVHEAGRAEVDAAVQAARAAL-KGPWGKMSVSERAEILHRVADGITARFDEFLEAECLDTGKP 95          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: ABDH_SHIFL (Gamma-aminobutyraldehyde dehydrogenase OS=Shigella flexneri GN=ydcW PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  332 LINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKP 601
            LING+ V +  G+  PVY+P T +V+  +AE  AE +  AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP
Sbjct:    6 LINGERV-SGEGEKQPVYNPATGDVLLEIAEVSAEQVDAAVRAADAAFAE--WGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKP 92          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: ABDH_PECCP (Gamma-aminobutyraldehyde dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=PC1_1415 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 2
Query:  332 LINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPY 604
            LI G+ V A  G+   V++P T E IA +A+ D   +  AV  A  AF    W + TP  R+ ++L+ AD IE+N E  A LE+ N GKPY
Sbjct:    6 LIEGKLV-AGKGEALAVFNPATGEQIAAIAQADLHQVDAAVLAAESAFAH--WGQTTPKTRATLLLQIADAIEENAEAFARLESLNCGKPY 93          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: BETB_VIBSL (Betaine aldehyde dehydrogenase OS=Vibrio splendidus (strain LGP32) GN=betB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 34/89 (38.20%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKP 601
            I+G+ VDA SG+TF   +P   E IA + +  + D+  A+ +A++ F    W  MT  ERSRI+L+A +++     +LA LE  + GKP
Sbjct:    8 IDGKAVDATSGETFVSINPANGEPIATLGQASSADVENAIESAKRGF--AVWSAMTAVERSRILLKAVEILRARNNDLANLEVVDTGKP 94          
The following BLAST results are available for this feature:
BLAST of GO241419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
HPCC_ECOLX2.235e-1143.015-carboxymethyl-2-hydroxymuconate semialdehyde deh... [more]
ABDH_SHIF82.235e-1143.33Gamma-aminobutyraldehyde dehydrogenase OS=Shigella... [more]
ABDH_ECO273.812e-1142.22Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
DMPC_PSEUF4.979e-1142.702-hydroxymuconic semialdehyde dehydrogenase OS=Pse... [more]
ABDH_SHIFL4.979e-1143.33Gamma-aminobutyraldehyde dehydrogenase OS=Shigella... [more]
ABDH_PECCP4.979e-1141.76Gamma-aminobutyraldehyde dehydrogenase OS=Pectobac... [more]
BETB_VIBSL6.503e-1138.20Betaine aldehyde dehydrogenase OS=Vibrio splendidu... [more]

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Properties
Property NameValue
Genbank description67 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 151 5, mRNA sequence.