GO241419

Overview
NameGO241419
Unique NameGO241419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241419_ssr92 microsatellite GO241419_ssr92:92..119. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7410 contig Csv1_Contig7410:107..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: ALDH_ALTAL (Aldehyde dehydrogenase OS=Alternaria alternata GN=ALTA10 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.560e-17
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPY 604
            IN +FV A  GKTF V +P T EVI +V E   +D+  AVA ARKAF+ GPW K TP  R +++ + ADL EKN + +AA+E  +NGK +
Sbjct:   22 INNEFVKAVDGKTFDVINPSTEEVICSVQEATEKDVDIAVAAARKAFN-GPWRKETPENRGKLLNKLADLFEKNADLIAAVEALDNGKAF 110          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: BETB_BURS3 (Betaine aldehyde dehydrogenase OS=Burkholderia sp. (strain 383) GN=betB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.072e-17
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKP 601
            I G +VDA SGKTF  +DP T E++A V +  A D+ RAVA+A++   E  W  MT  +RSRI+ RA DL+ +  +ELAALET + GKP
Sbjct:   11 IGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WAAMTAMQRSRILRRAVDLLRERNDELAALETRDTGKP 97          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: BETB_BURCJ (Betaine aldehyde dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=betB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.036e-16
Identity = 44/89 (49.44%), Postives = 60/89 (67.42%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKP 601
            I G +VDA SGKTF  +DP T E++A V +  A D+ RAVA+A++   E  W  MT  +RSRI+ RA DL+ +  +ELAA+ET + GKP
Sbjct:   11 IGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WAAMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKP 97          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: BETB_BURCC (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=betB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.036e-16
Identity = 44/89 (49.44%), Postives = 60/89 (67.42%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKP 601
            I G +VDA SGKTF  +DP T E++A V +  A D+ RAVA+A++   E  W  MT  +RSRI+ RA DL+ +  +ELAA+ET + GKP
Sbjct:   11 IGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WATMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKP 97          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: BETB_BURVG (Betaine aldehyde dehydrogenase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=betB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.767e-16
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKP 601
            I G +VDA SGKTF  +DP T E++A V +  A D+ RAVA+A++   E  W  +T  +RSRI+ RA DL+ +  +ELAA+ET + GKP
Sbjct:   11 IGGAYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQQGQRE--WAALTAMQRSRILRRAVDLLRERNDELAAIETRDTGKP 97          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: FTHFD_XENLA (10-formyltetrahydrofolate dehydrogenase OS=Xenopus laevis GN=aldh1l1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.307e-16
Identity = 40/90 (44.44%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPY 604
            INGQF+DA  GK++   +P     I  V+     DI RAVA A++AF+ G W KM P +R R++ R ADL+E++ EELA +E+ ++G  Y
Sbjct:  426 INGQFMDAEGGKSYDTINPTDGTAICKVSLAQISDIDRAVAAAKEAFENGEWGKMNPRDRGRLLYRLADLMEEHQEELATIESIDSGAVY 515          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.307e-16
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGK 598
            IN ++ D+ SGK FPV++P T E +  V EGD ED+ +AVA AR+AF  G PW  M   ER R++ + ADL+E++   LA +E+ N GK
Sbjct:   24 INNEWHDSVSGKKFPVFNPATEEKLCEVEEGDKEDVNKAVAAARQAFQIGSPWRTMDASERGRLLYKLADLVERDRLILATMESMNGGK 112          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: BETB_BURM1 (Betaine aldehyde dehydrogenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=betB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.014e-16
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            I G +VDA SGKTF  +DP T +++A V +  A D+ RA+A+A++   E  W  MT  +RSRI+ RA +L+ +  +ELAALET + GKP  ++
Sbjct:   11 IGGGYVDATSGKTFDTFDPATGDLLAQVQQASAADVDRAIASAQEGQRE--WAAMTAMQRSRILRRAVELLRERNDELAALETRDTGKPIAET 101          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: BETB_BURCH (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=betB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.014e-16
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKP 601
            I G +VDA SGKTF  +DP T E++A V +  A D+ RAVA+A++   E  W  MT  +RSRI+ RA +L+ +  +ELAA+ET + GKP
Sbjct:   11 IGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WAAMTAMQRSRILRRAVELLRERNDELAAIETRDTGKP 97          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: BETB_BURCA (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=betB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.014e-16
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKP 601
            I G +VDA SGKTF  +DP T E++A V +  A D+ RAVA+A++   E  W  MT  +RSRI+ RA +L+ +  +ELAA+ET + GKP
Sbjct:   11 IGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WAAMTAMQRSRILRRAVELLRERNDELAAIETRDTGKP 97          
The following BLAST results are available for this feature:
BLAST of GO241419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
ALDH_ALTAL3.560e-1750.00Aldehyde dehydrogenase OS=Alternaria alternata GN=... [more]
BETB_BURS36.072e-1750.56Betaine aldehyde dehydrogenase OS=Burkholderia sp.... [more]
BETB_BURCJ1.036e-1649.44Betaine aldehyde dehydrogenase OS=Burkholderia cep... [more]
BETB_BURCC1.036e-1649.44Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]
BETB_BURVG1.767e-1648.31Betaine aldehyde dehydrogenase OS=Burkholderia vie... [more]
FTHFD_XENLA2.307e-1644.4410-formyltetrahydrofolate dehydrogenase OS=Xenopus... [more]
AL1A1_HORSE2.307e-1647.19Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]
BETB_BURM13.014e-1645.16Betaine aldehyde dehydrogenase OS=Burkholderia mul... [more]
BETB_BURCH3.014e-1648.31Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]
BETB_BURCA3.014e-1648.31Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]

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Properties
Property NameValue
Genbank description67 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 151 5, mRNA sequence.