GO241419

Overview
NameGO241419
Unique NameGO241419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241419_ssr92 microsatellite GO241419_ssr92:92..119. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7410 contig Csv1_Contig7410:107..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: AL1L2_MOUSE (Probable 10-formyltetrahydrofolate dehydrogenase ALDH1L2 OS=Mus musculus GN=Aldh1l2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.014e-16
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPY 604
            INGQFVDA  G+T+   +P     I  V+     D+ RAVA A+ AF+ G W +M   +R R+M R ADL+E+N EELA +E  ++G  Y
Sbjct:  447 INGQFVDAEDGETYATVNPTDGTTICRVSHASLADVDRAVAAAKDAFENGEWGRMNARDRGRLMYRLADLMEENQEELATIEALDSGAVY 536          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.014e-16
Identity = 43/91 (47.25%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPY 604
            IN ++ D+ SGK FPV++P T E +  V EGD ED+ +AV  AR+AF  G PW  M   ER R++ + ADLIE++   LA +E+ N GK Y
Sbjct:   25 INNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLY 115          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: AL1L2_HUMAN (Probable 10-formyltetrahydrofolate dehydrogenase ALDH1L2 OS=Homo sapiens GN=ALDH1L2 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.936e-16
Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPY 604
            INGQF DA  GKT+   +P     I  V+     D+ +AVA A+ AF+ G W +M   ER R+M R ADL+E+N EELA +E  ++G  Y
Sbjct:  447 INGQFTDADDGKTYDTINPTDGSTICKVSYASLADVDKAVAAAKDAFENGEWGRMNARERGRLMYRLADLLEENQEELATIEALDSGAVY 536          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: ALDH_ENCBU (Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN=ALDH PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.714e-16
Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFD-EGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            IN +FVD+ SGKTF   +P T E +A V EGD  DI +AVA AR AF  +  + K    +R R++ + ADLIE +  +L  LET +NGKP+  S
Sbjct:   22 INNEFVDSVSGKTFATINPSTGEKLAEVQEGDKADIDKAVAAARAAFKRDAEYRKHDASDRGRLLFKLADLIEAHRVQLRTLETLDNGKPFAMS 115          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: AL1A1_MACFA (Retinal dehydrogenase 1 OS=Macaca fascicularis GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.496e-15
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPY 604
            IN ++ D+ SGK FPV++P T E +  V EGD  D+ +AV  AR+AF  G PW  M   ER R++ + ADLIE++   LA +E+ N GK Y
Sbjct:   25 INNEWHDSVSGKKFPVFNPATEEELCQVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLY 115          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: BETB_BURPP (Betaine aldehyde dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=betB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.953e-15
Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            I G +VDA SG+TF   DP T E +A+V +  A D+ RAV +A++   E  W  +T  +RSRI+ RA DL+ +  +ELAALET + GKP  ++
Sbjct:   11 IGGGYVDATSGETFDTLDPATGETLASVQQASAADVDRAVRSAKQGQRE--WAALTAMQRSRILRRAVDLLRERNDELAALETRDTGKPIAET 101          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: ALDH1_MACPR (Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelides proboscideus GN=ALDH1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.953e-15
Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            IN ++ D+ SGKTFPV++P T E I  V E D ED+ +AV  AR+AF  G PW  M   ER +++ + ADLIE++   LA LE+ N GK +  +
Sbjct:   25 INNEWHDSVSGKTFPVFNPATEEKICEVEEADKEDVDKAVKAAREAFQMGSPWRTMDASERGQLIYKLADLIERDRLLLATLESINAGKIFASA 118          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: ALDH_EMENI (Aldehyde dehydrogenase OS=Emericella nidulans GN=aldA PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.551e-15
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            IN +FV    GKTF V +P   +VI +V E   +D+  AVA AR AF EGPW ++TP ER  ++ + ADL+E++++ LAA+E+ +NGK +  +
Sbjct:   23 INNEFVKGVEGKTFQVINPSNEKVITSVHEATEKDVDVAVAAARAAF-EGPWRQVTPSERGILINKLADLMERDIDTLAAIESLDNGKAFTMA 114          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: AL1A2_HUMAN (Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGP-WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            IN ++ ++ SG+ FPVY+P T E +  V E D  DI +AV  AR AF  G  W +M   ER R++ + ADL+E++   LA +E+ N GKP++Q+
Sbjct:   42 INNEWQNSESGRVFPVYNPATGEQVCEVQEADKADIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRAVLATMESLNGGKPFLQA 135          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: CROM_OMMSL (Omega-crystallin OS=Ommastrephes sloanei PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 4.352e-15
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            IN QFV++ S K +PVY+P   E +  V EGD  DI +AV   + AF  G PW +M       ++ R ADL+E+++  +A+LET + GKPY  S
Sbjct:   20 INNQFVNSTSNKAYPVYNPCDNEKVCEVQEGDKSDIDKAVQACKAAFKRGTPWRRMDASRLGHLLYRLADLMERDIAYMASLETMDTGKPYKNS 113          
The following BLAST results are available for this feature:
BLAST of GO241419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
AL1L2_MOUSE3.014e-1644.44Probable 10-formyltetrahydrofolate dehydrogenase A... [more]
AL1A1_HUMAN3.014e-1647.25Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
AL1L2_HUMAN3.936e-1644.44Probable 10-formyltetrahydrofolate dehydrogenase A... [more]
ALDH_ENCBU6.714e-1646.81Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN... [more]
AL1A1_MACFA1.496e-1546.15Retinal dehydrogenase 1 OS=Macaca fascicularis GN=... [more]
BETB_BURPP1.953e-1545.16Betaine aldehyde dehydrogenase OS=Burkholderia phy... [more]
ALDH1_MACPR1.953e-1545.74Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelid... [more]
ALDH_EMENI2.551e-1544.09Aldehyde dehydrogenase OS=Emericella nidulans GN=a... [more]
AL1A2_HUMAN3.332e-1542.55Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2... [more]
CROM_OMMSL4.352e-1542.55Omega-crystallin OS=Ommastrephes sloanei PE=2 SV=3[more]

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Properties
Property NameValue
Genbank description67 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 151 5, mRNA sequence.