GO241419

Overview
NameGO241419
Unique NameGO241419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241419_ssr92 microsatellite GO241419_ssr92:92..119. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7410 contig Csv1_Contig7410:107..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: ALDH1_ELEED (Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulus edwardii GN=ALDH1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.352e-15
Identity = 42/94 (44.68%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            IN ++ ++ SGKTFPV++P T E I  V E D ED+ +AV  AR+AF  G PW  M   ER +++ + ADLIE++   LA LE+ N GK +  +
Sbjct:   25 INNEWHESVSGKTFPVFNPATEEKICEVEEADKEDVDKAVKAAREAFQMGSPWRTMDASERGQLIYKLADLIERDRLLLATLESINAGKVFASA 118          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: BETB_BURXL (Betaine aldehyde dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=betB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.683e-15
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            I G +VDA SG+TF   DP T E +A+V +  A D+ RAV +AR+   E  W  +T  +RSR++ RA +++ +  +ELAALET + GKP  ++
Sbjct:   11 IGGAYVDATSGETFDTLDPATGETLASVQQASAADVERAVQSAREGQRE--WAALTAMQRSRVLRRAVEILRERNDELAALETRDTGKPIAET 101          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 5.683e-15
Identity = 42/94 (44.68%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            IN ++ D+ SGK FPV +P T EVI +V EGD  D+ +AV  AR+AF  G PW  M   ER R++ + ADL+E++   LA +E  N GK +  +
Sbjct:   25 INNEWHDSVSGKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATIEAINGGKVFANA 118          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: CROM_ENTDO (Omega-crystallin OS=Enteroctopus dofleini PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 9.694e-15
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPY 604
            IN QFVD+ +GK + V +P T + I +V EG   DI +AV   + AF  G PW +M    R  ++ R ADL E+++  L++LET N GKPY
Sbjct:   20 INNQFVDSVNGKAYSVINPCTTKKICDVQEGSKADIDKAVQACKLAFKRGTPWRRMDASRRGHLLYRLADLFERDIAYLSSLETLNTGKPY 110          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: AL1A1_SHEEP (Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 9.694e-15
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGK 598
            IN ++  + SGK FPV++P T E +  V EGD ED+ +AV  AR+AF  G PW  M   ER R++ + ADLIE++   LA +E  N GK
Sbjct:   25 INNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGK 113          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: AL1A1_BOVIN (Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.266e-14
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGK 598
            IN ++  + SGK FPV++P T E +  V EGD ED+ +AV  AR+AF  G PW  M   ER R++ + ADLIE++   LA +E  N GK
Sbjct:   25 INNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDHLLLATMEAMNGGK 113          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: BETB_BURPS (Betaine aldehyde dehydrogenase OS=Burkholderia pseudomallei GN=betB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.654e-14
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            I G   DA SGKTF  +DP T E++A V +  A+D+ RAVA+AR+   E  W  MT  +RSRI+ RA +L+ +  + LA LE  + GKP  ++
Sbjct:   11 IAGAHADATSGKTFDTFDPATGELLARVQQASADDVDRAVASAREGQRE--WAAMTAMQRSRILRRAVELLRERNDALAELEMRDTGKPIAET 101          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: BETB_BURP8 (Betaine aldehyde dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=betB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.654e-14
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            I G +VDA SG TF  +DP T E++A V +    DI RAV +AR+   +  W  MT  +RSRI+ RA DL+ +  +ELA LE  + GKP  ++
Sbjct:   11 IGGDYVDATSGVTFDTFDPATGELLATVQQASEADIERAVQSAREG--QRAWAAMTAMQRSRILRRAVDLLRERNDELAELEMRDTGKPIAET 101          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: BETB_BURP1 (Betaine aldehyde dehydrogenase OS=Burkholderia pseudomallei (strain 1710b) GN=betB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.654e-14
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            I G   DA SGKTF  +DP T E++A V +  A+D+ RAVA+AR+   E  W  MT  +RSRI+ RA +L+ +  + LA LE  + GKP  ++
Sbjct:   11 IAGAHADATSGKTFDTFDPATGELLARVQQASADDVDRAVASAREGQRE--WAAMTAMQRSRILRRAVELLRERNDALAELEMRDTGKPIAET 101          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: BETB_BURP0 (Betaine aldehyde dehydrogenase OS=Burkholderia pseudomallei (strain 1106a) GN=betB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.654e-14
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            I G   DA SGKTF  +DP T E++A V +  A+D+ RAVA+AR+   E  W  MT  +RSRI+ RA +L+ +  + LA LE  + GKP  ++
Sbjct:   11 IAGAHADATSGKTFDTFDPATGELLARVQQASADDVDRAVASAREGQRE--WAAMTAMQRSRILRRAVELLRERNDALAELEMRDTGKPIAET 101          
The following BLAST results are available for this feature:
BLAST of GO241419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
ALDH1_ELEED4.352e-1544.68Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulu... [more]
BETB_BURXL5.683e-1543.01Betaine aldehyde dehydrogenase OS=Burkholderia xen... [more]
AL1A1_RAT5.683e-1544.68Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
CROM_ENTDO9.694e-1543.96Omega-crystallin OS=Enteroctopus dofleini PE=1 SV=... [more]
AL1A1_SHEEP9.694e-1546.07Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 P... [more]
AL1A1_BOVIN1.266e-1446.07Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 P... [more]
BETB_BURPS1.654e-1444.09Betaine aldehyde dehydrogenase OS=Burkholderia pse... [more]
BETB_BURP81.654e-1444.09Betaine aldehyde dehydrogenase OS=Burkholderia phy... [more]
BETB_BURP11.654e-1444.09Betaine aldehyde dehydrogenase OS=Burkholderia pse... [more]
BETB_BURP01.654e-1444.09Betaine aldehyde dehydrogenase OS=Burkholderia pse... [more]

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Properties
Property NameValue
Genbank description67 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 151 5, mRNA sequence.