GO241419

Overview
NameGO241419
Unique NameGO241419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241419_ssr92 microsatellite GO241419_ssr92:92..119. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7410 contig Csv1_Contig7410:107..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: BETB_KLEP3 (Betaine aldehyde dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=betB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKP 601
            ING +  A SG+TF   +P T EV+A V     ED+ RAV +A++   +  W  MT  ERSRI+ RA DL+ +  +ELA LET + GKP
Sbjct:   11 INGGYTSATSGRTFETINPATGEVLATVQAAGREDVDRAVESAQRG--QKIWAAMTAMERSRILRRAVDLLRQRNDELARLETLDTGKP 97          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGP-WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            IN ++ ++ SG+ FPV +P T E +  V E D  DI +AV  AR AF  G  W +M   ER R++ + ADL+E++   LA +E+ N GKP++Q+
Sbjct:   42 INNEWQNSESGRVFPVCNPATGEQVCEVQEADKVDIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQA 135          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGP-WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            IN ++ ++ SG+ FPV +P T E +  V E D  DI +AV  AR AF  G  W +M   ER R++ + ADL+E++   LA +E+ N GKP++Q+
Sbjct:   42 INNEWQNSESGRVFPVCNPATGEQVCEVQEADKVDIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQA 135          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: AL1A2_CHICK (Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A2 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 38/94 (40.43%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGP-WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            IN ++ ++ SG+ FPVY+P T E I  + E D  D  +AV  AR AF  G  W +M   ER +++ + ADL+E++   LA +E+ N+GKP++Q+
Sbjct:   42 INNEWQNSESGRVFPVYNPATGEQICEIQEADKVDTDKAVRAARLAFSLGSVWRRMDASERGQLLDKLADLVERDRAVLATMESLNSGKPFLQA 135          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: AL1A1_CHICK (Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGK 598
            IN ++ D+ SGK F V++P   E I  VAEGD  DI +AV  ARKAF+ G PW  M   ER R++ + ADL+E++   LA +E  + GK
Sbjct:   33 INNEWHDSVSGKKFEVFNPANEEKICEVAEGDKADIDKAVKAARKAFELGSPWRTMDASERGRLLNKLADLVERDRLTLATMEAIDGGK 121          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: ABDH_SERP5 (Gamma-aminobutyraldehyde dehydrogenase OS=Serratia proteamaculans (strain 568) GN=Spro_3642 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 43/91 (47.25%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  332 LINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPY 604
            LINGQ V    G   PVY+P T EV+  VAE  AE + +AV  A  AF+   W + TP ER+  +L+ ADLI+ + E  A LE+ N GKPY
Sbjct:    6 LINGQLV-TGQGALLPVYNPATGEVVVQVAEASAEQVDQAVLAADAAFEH--WGQTTPKERAEHLLKLADLIDSHAETFARLESINCGKPY 93          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.811e-14
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGK 598
            IN ++ D+ SGK FPV +P T E I  + EGD  D+ +AV  AR+AF  G PW  M   ER R++ + ADLIE++   LA +E+ N GK
Sbjct:   20 INNEWHDSVSGKKFPVLNPATEEQICLIEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESLNAGK 108          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: BETB_YERP3 (Betaine aldehyde dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=betB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.284e-14
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKP 601
            ING + D+ASG TF   +P   E IA +   +A+D+ +AVA A++   +  W  MT  ERSRI+ RA D++    +ELAA+ET + GKP
Sbjct:   11 INGAYTDSASGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG--QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKP 97          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: AL1A2_TAEGU (Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=ALDH1A2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.284e-14
Identity = 38/94 (40.43%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGP-WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            IN ++ ++ SG+ FPVY+P T E I ++ E D  D  +AV  AR AF  G  W +M   ER  ++ + ADL+E++   LA +E+ N+GKP++Q+
Sbjct:   42 INNEWQNSESGRIFPVYNPATGEQICDIQEADKVDTDKAVRAARLAFSLGSVWRRMDASERGHLLDKLADLVERDRAILATMESLNSGKPFLQA 135          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: BETB_PSEA7 (Betaine aldehyde dehydrogenase OS=Pseudomonas aeruginosa (strain PA7) GN=betB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.207e-14
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            I G++V+A+SG TF   +P   EV+A V     ED+ RAV +A +   +  W  MT  +RSRI+ RA DL+ +  +ELAALET + GKP  ++
Sbjct:   11 IGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEG--QKVWAAMTAMQRSRILRRAVDLLRERNDELAALETLDTGKPLAET 101          
The following BLAST results are available for this feature:
BLAST of GO241419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
BETB_KLEP33.684e-1446.07Betaine aldehyde dehydrogenase OS=Klebsiella pneum... [more]
AL1A2_RAT3.684e-1441.49Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]
AL1A2_MOUSE3.684e-1441.49Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]
AL1A2_CHICK3.684e-1440.43Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A... [more]
AL1A1_CHICK3.684e-1446.07Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A... [more]
ABDH_SERP53.684e-1447.25Gamma-aminobutyraldehyde dehydrogenase OS=Serratia... [more]
AL1A1_RABIT4.811e-1446.07Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
BETB_YERP36.284e-1443.82Betaine aldehyde dehydrogenase OS=Yersinia pseudot... [more]
AL1A2_TAEGU6.284e-1440.43Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=... [more]
BETB_PSEA78.207e-1443.01Betaine aldehyde dehydrogenase OS=Pseudomonas aeru... [more]

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Properties
Property NameValue
Genbank description67 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 151 5, mRNA sequence.