GO241419

Overview
NameGO241419
Unique NameGO241419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241419_ssr92 microsatellite GO241419_ssr92:92..119. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7410 contig Csv1_Contig7410:107..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: ALDH_ASPNG (Aldehyde dehydrogenase OS=Aspergillus niger GN=aldA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.207e-14
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGK 598
            I+G+FV  A GKTF   +P   + I  V E   +D+  AVA ARKAF EG W ++TP  R R++ + ADL E++ E LA++E  +NGK
Sbjct:   24 IDGEFVKGAEGKTFETINPSNEKPIVAVHEATEKDVDTAVAAARKAF-EGSWRQVTPSTRGRMLTKLADLFERDAEILASIEALDNGK 110          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: AL1A3_HUMAN (Aldehyde dehydrogenase family 1 member A3 OS=Homo sapiens GN=ALDH1A3 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.207e-14
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            IN ++ ++ SGK F   +P T E I  V EGD  D+ +AV  A+ AF  G PW ++    R R++ + ADL+E++   LAALET + GKP++ +
Sbjct:   36 INNEWHESKSGKKFATCNPSTREQICEVEEGDKPDVDKAVEAAQVAFQRGSPWRRLDALSRGRLLHQLADLVERDRATLAALETMDTGKPFLHA 129          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: FTHFD_MOUSE (10-formyltetrahydrofolate dehydrogenase OS=Mus musculus GN=Aldh1l1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPY 604
            I G+FVDA   KT+   +P    VI  V+     D+ +AVA A++AF+ G W K+   +R R++ R ADL+E++ EELA +E  + G  Y
Sbjct:  426 IGGEFVDAEGAKTYSTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADLMEQHQEELATIEALDAGAVY 515          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: BETB_BACSU (Betaine aldehyde dehydrogenase OS=Bacillus subtilis GN=gbsA PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 37/93 (39.78%), Postives = 61/93 (65.59%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            I+G+++ A   +   + +P   E IA V+EG  ED  +A+A AR+AFD+G W  ++  ER +I+L+ A+LI +++EELA LE+ + GK   +S
Sbjct:    7 IDGEWISAEKEQIRSIINPFNQEEIATVSEGGREDAIKAIAAARRAFDKGEWSSLSGLERGKIVLKIAELIRRDLEELAELESLDTGKTLEES 99          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: ALDH_CLAHE (Aldehyde dehydrogenase OS=Cladosporium herbarum GN=CLAH10 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGK 598
            IN +FV    GKTF V +P    VI  V E   +D+  AVA ARKAF EG W + TP  R +++   A+L EKN++ LAA+E+ +NGK
Sbjct:   22 INNEFVKGQEGKTFDVINPSDESVITQVHEATEKDVDIAVAAARKAF-EGSWRQETPENRGKLLNNLANLFEKNIDLLAAVESLDNGK 108          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: AL1B1_BOVIN (Aldehyde dehydrogenase X, mitochondrial (Fragment) OS=Bos taurus GN=ALDH1B1 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQS 613
            I+ ++ DA S KTFP   P T EVI +VAEGD  D+  A   AR AF  G PW  M   +R  ++   ADL+E++   LA+LE+ +NGKP+ +S
Sbjct:   35 ISNKWHDAVSKKTFPTVSPATGEVIGHVAEGDWADVDLAAKAARAAFRLGSPWRWMDALKRGWLLNHLADLVERDCVYLASLESLDNGKPFQES 128          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: FTHFD_PONAB (10-formyltetrahydrofolate dehydrogenase OS=Pongo abelii GN=ALDH1L1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.400e-13
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPY 604
            I G+FVDA   KT+   +P    VI  V+     D+ +AVA A+ AF+ G W K++  +R R++ R ADL+E++ EELA +E  + G  Y
Sbjct:  426 IGGEFVDAEGAKTYETINPTDGSVICQVSLAQVTDVDKAVAAAKDAFENGRWGKISARDRGRLLYRLADLMEQHQEELATIEALDAGAVY 515          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: BETB_XANCP (Betaine aldehyde dehydrogenase OS=Xanthomonas campestris pv. campestris GN=betB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.400e-13
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKP 601
            I G++V A  G TF V +P T EV+ANV   DA+D+  AV +A+    +  W  +T  ERSRI+LRA  L+ +  + LA LET N GKP
Sbjct:   11 IGGRYVPARGGHTFEVVNPATGEVLANVHNADADDLDAAVDSAKAG--QRHWAALTVVERSRILLRAVALLRERNDALAELETLNTGKP 97          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: BETB_XANCB (Betaine aldehyde dehydrogenase OS=Xanthomonas campestris pv. campestris (strain B100) GN=betB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.400e-13
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKP 601
            I G++V A  G TF V +P T EV+ANV   DA+D+  AV +A+    +  W  +T  ERSRI+LRA  L+ +  + LA LET N GKP
Sbjct:   11 IGGRYVPARGGHTFEVVNPATGEVLANVHNADADDLDAAVDSAKAG--QRHWAALTVVERSRILLRAVALLRERNDALAELETLNTGKP 97          
BLAST of GO241419 vs. ExPASy Swiss-Prot
Match: BETB_XANC8 (Betaine aldehyde dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=betB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.400e-13
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  335 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIGRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKP 601
            I G++V A  G TF V +P T EV+ANV   DA+D+  AV +A+    +  W  +T  ERSRI+LRA  L+ +  + LA LET N GKP
Sbjct:   11 IGGRYVPARGGHTFEVVNPATGEVLANVHNADADDLDAAVDSAKAG--QRHWAALTVVERSRILLRAVALLRERNDALAELETLNTGKP 97          
The following BLAST results are available for this feature:
BLAST of GO241419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
ALDH_ASPNG8.207e-1445.45Aldehyde dehydrogenase OS=Aspergillus niger GN=ald... [more]
AL1A3_HUMAN8.207e-1440.43Aldehyde dehydrogenase family 1 member A3 OS=Homo ... [more]
FTHFD_MOUSE1.072e-1340.0010-formyltetrahydrofolate dehydrogenase OS=Mus mus... [more]
BETB_BACSU1.072e-1339.78Betaine aldehyde dehydrogenase OS=Bacillus subtili... [more]
ALDH_CLAHE1.072e-1346.59Aldehyde dehydrogenase OS=Cladosporium herbarum GN... [more]
AL1B1_BOVIN1.072e-1344.68Aldehyde dehydrogenase X, mitochondrial (Fragment)... [more]
FTHFD_PONAB1.400e-1340.0010-formyltetrahydrofolate dehydrogenase OS=Pongo a... [more]
BETB_XANCP1.400e-1346.07Betaine aldehyde dehydrogenase OS=Xanthomonas camp... [more]
BETB_XANCB1.400e-1346.07Betaine aldehyde dehydrogenase OS=Xanthomonas camp... [more]
BETB_XANC81.400e-1346.07Betaine aldehyde dehydrogenase OS=Xanthomonas camp... [more]

Pages

back to top
Properties
Property NameValue
Genbank description67 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 151 5, mRNA sequence.