GO241413

Overview
NameGO241413
Unique NameGO241413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS5B_DROME (40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.621e-41
Identity = 85/117 (72.65%), Postives = 99/117 (84.62%), Query Frame = 2
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            +A RIVKHA EII LL  +NP+QV V+A++NSGPRE +TRIG AG VRRQAVD+SPL RVNQAI+ +  GARE+AFRNIKT+AECLADELINAAKGS NSYAI  KDE+ RVAK+ R
Sbjct:  114 LACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 230          
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.766e-41
Identity = 85/117 (72.65%), Postives = 98/117 (83.76%), Query Frame = 2
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            MAVRIV HA EII L+  QNPIQ+ VDA++N GPRE +TRIGSAG VRRQAVD+SPL RVNQAI  L  GARE++FRN+K+IAECLA+ELINAAKGS NSYAI  KDE+ RVAK+ R
Sbjct:   97 MAVRIVAHAFEIIHLMTDQNPIQIAVDAIVNCGPREDSTRIGSAGTVRRQAVDVSPLRRVNQAIALLTTGAREASFRNVKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 213          
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS5B_SCHPO (40S ribosomal protein S5-B OS=Schizosaccharomyces pombe GN=rps5b PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.982e-39
Identity = 82/117 (70.09%), Postives = 97/117 (82.91%), Query Frame = 2
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            +A RIVKHA EII LL  QNP+QV+VDAV   GPRE +TRIGSAG VRRQAVD+SPL RVNQA+  +  GARE+AFRN+K+I+ECLA+E+INAAKGS NSYAI  KDE+ RVAK+ R
Sbjct:   87 LATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203          
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS5A_SCHPO (40S ribosomal protein S5-A OS=Schizosaccharomyces pombe GN=rps5a PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.982e-39
Identity = 82/117 (70.09%), Postives = 97/117 (82.91%), Query Frame = 2
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            +A RIVKHA EII LL  QNP+QV+VDAV   GPRE +TRIGSAG VRRQAVD+SPL RVNQA+  +  GARE+AFRN+K+I+ECLA+E+INAAKGS NSYAI  KDE+ RVAK+ R
Sbjct:   87 LATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203          
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.589e-39
Identity = 80/117 (68.38%), Postives = 99/117 (84.62%), Query Frame = 2
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            MAVRIV+H+ EI+ LL  +NP+Q++ +A+ NSGPRE +TRIG AG VRRQAVD++PL RVNQAI+ L  GARE++FRNIK+IAECLADELINAA+GS NSYAI  KDE+ RVAK+ R
Sbjct:   94 MAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIKKKDELERVAKSNR 210          
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS5_DICDI (40S ribosomal protein S5 OS=Dictyostelium discoideum GN=rps5 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.678e-38
Identity = 78/117 (66.67%), Postives = 96/117 (82.05%), Query Frame = 2
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            MAVRI++ A EII LL  +NP+QV+V+AV+NSGPRE +TRIGSAG VRRQAVD+SP+ RVN A+Y L  G R +AFRNI+T+AECLADELINA+KGS NSY+I  KD + R AK+ R
Sbjct:   74 MAVRIIEQAFEIIYLLTDKNPLQVLVEAVMNSGPREDSTRIGSAGTVRRQAVDVSPMRRVNHAVYLLTQGTRAAAFRNIRTVAECLADELINASKGSPNSYSIKQKDALERTAKSHR 190          
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS5_YEAST (40S ribosomal protein S5 OS=Saccharomyces cerevisiae GN=RPS5 PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 3.738e-38
Identity = 80/116 (68.97%), Postives = 93/116 (80.17%), Query Frame = 2
Query:    5 AVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            AVRI+KH ++II +L  QNPIQV+VDA+ N+GPRE  TR+G  G  RRQAVD+SPL RVNQAI  L  GARE+AFRNIKTIAE LA+ELINAAKGS  SYAI  KDE+ RVAK+ R
Sbjct:  110 AVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR 225          
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS5_ENTHI (40S ribosomal protein S5 (Fragment) OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.859e-31
Identity = 64/117 (54.70%), Postives = 89/117 (76.07%), Query Frame = 2
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            +A+R+V+ + EII LL  +NPIQV+VDA+IN+ PRE +TR+G+ G VR QAVD+SPL R+N A+Y L  G R  AFRN K++AECLADE++NA+K    S+AI  K+++ RVA + R
Sbjct:   32 LAMRVVEESFEIIHLLTEKNPIQVLVDAIINASPREDSTRVGTGGNVRGQAVDVSPLRRINHALYLLIMGCRCGAFRNSKSLAECLADEIVNASKSYTGSFAIMKKEDLERVANSNR 148          
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS5_ENCCU (40S ribosomal protein S5 OS=Encephalitozoon cuniculi GN=RPS5 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.739e-25
Identity = 58/117 (49.57%), Postives = 82/117 (70.09%), Query Frame = 2
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            +A+ I + A  II  +  +NP+QV+VDA++NSGPRE   RIG AG +RR +VD+SPL R++ AI  L  G R ++FRN  T+AE +A+ELI A+  S NSYA+  K EI R+A++ R
Sbjct:   92 LAINIFEDACFIIHSMTKKNPLQVLVDAIVNSGPREDTARIGRAGSMRRTSVDVSPLKRISIAISNLSAGIRNASFRNRITLAEAIANELIAASTNSQNSYAVNKKKEIERIAQSNR 208          
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS7_AERPE (30S ribosomal protein S7P OS=Aeropyrum pernix GN=rps7p PE=3 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.167e-23
Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 2
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            +A  IVK A +II     +NPIQV+V A+ NS PRE  T+I   G+  R +VD++P  RV+QA+  +  GAR+ AF N K I ECLA+ELI AA+G   SYAI  K+EI R+A + R
Sbjct:   89 LAYNIVKTAFDIIYFETGENPIQVLVKAIENSAPREDTTKITYGGITYRVSVDVAPQRRVDQALKFIADGARQCAFNNPKPIEECLAEELILAARGDPRSYAIRQKEEIERIALSSR 205          
The following BLAST results are available for this feature:
BLAST of GO241413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS5B_DROME1.621e-4172.6540S ribosomal protein S5b OS=Drosophila melanogast... [more]
RS5_NEUCR2.766e-4172.6540S ribosomal protein S5 OS=Neurospora crassa GN=r... [more]
RS5B_SCHPO1.982e-3970.0940S ribosomal protein S5-B OS=Schizosaccharomyces ... [more]
RS5A_SCHPO1.982e-3970.0940S ribosomal protein S5-A OS=Schizosaccharomyces ... [more]
RS5_PODCA2.589e-3968.3840S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]
RS5_DICDI1.678e-3866.6740S ribosomal protein S5 OS=Dictyostelium discoide... [more]
RS5_YEAST3.738e-3868.9740S ribosomal protein S5 OS=Saccharomyces cerevisi... [more]
RS5_ENTHI9.859e-3154.7040S ribosomal protein S5 (Fragment) OS=Entamoeba h... [more]
RS5_ENCCU4.739e-2549.5740S ribosomal protein S5 OS=Encephalitozoon cunicu... [more]
RS7_AERPE1.167e-2349.5730S ribosomal protein S7P OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank description61 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 145 5, mRNA sequence.