GO241413

Overview
NameGO241413
Unique NameGO241413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS7_KORCO (30S ribosomal protein S7P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps7p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.250e-17
Identity = 56/117 (47.86%), Postives = 74/117 (63.25%), Query Frame = 2
Query:    5 AVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXN-SYAIXXKDEIXRVAKAXR 352
            A+R VK+A EII L   +NPIQV +DA+ NS  RE  TRI   GV    AVD SP   V+ AI  +  GA   AFR+ +++AE LA+E+I AA+   N S+AI  K+EI R+A + R
Sbjct:   92 AMRTVKYAFEIIELRTGKNPIQVFLDAIENSIIREEVTRIMYGGVSYFHAVDTSPSRMVDLAIRHIAQGAAMKAFRSPRSLAEALAEEIIAAAEYDRNRSFAIRRKEEIERIALSSR 208          
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS7_THEGJ (30S ribosomal protein S7P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps7p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.633e-17
Identity = 49/116 (42.24%), Postives = 68/116 (58.62%), Query Frame = 2
Query:    5 AVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            A  +VK A  II     QNPIQV++ A+ NS PRE  T I   G+    AVD+SPL R++ A+  +  GA    +RN  T A+ LA+E+I AA     S+A   K+EI R+A++ R
Sbjct:  100 AYEVVKEAFMIIERRTKQNPIQVLIRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDVALKNIALGASIKCYRNKTTYAQALAEEIIAAANRDPKSFAYSKKEEIERIAQSSR 215          
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS7_PYRKO (30S ribosomal protein S7P OS=Pyrococcus kodakaraensis GN=rps7p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.785e-17
Identity = 49/116 (42.24%), Postives = 68/116 (58.62%), Query Frame = 2
Query:    5 AVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            A  +VK A  II     QNPIQV+V A+ NS PRE  T I   G+    +VD+SPL R++ A+  +  GA    +RN  T A+ LA+E+I AA     S+A   K+EI R+A++ R
Sbjct:  100 AYEVVKEAFMIIERRTKQNPIQVLVKAIENSAPREDTTTIAFGGIRYHMSVDVSPLRRLDIALKNIALGASIKCYRNKTTYAQALAEEIIAAANKDPKSFAYSKKEEIERIAQSSR 215          
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS7_HALMA (30S ribosomal protein S7P OS=Haloarcula marismortui GN=rps7p PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.785e-17
Identity = 49/117 (41.88%), Postives = 67/117 (57.26%), Query Frame = 2
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            +A  IV  A E++     +NPIQV+V AV NS PRE   R+   G+   +AVD++P  RV+QA+  L  G    +F+   T AE LA +LI AA     +YA+  K+E  RVA A R
Sbjct:   90 LATSIVTEAFELVHERTDENPIQVLVSAVENSAPREETVRLKYGGISVPKAVDVAPQRRVDQALKFLAEGVYGGSFKTTTTAAEALAQQLIGAANDDVQTYAVNQKEEKERVAAAAR 206          
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS7_THECE (30S ribosomal protein S7P OS=Thermococcus celer GN=rps7p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.637e-17
Identity = 48/116 (41.38%), Postives = 68/116 (58.62%), Query Frame = 2
Query:    5 AVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            A  +VK A  II     QNPIQV+V A+ NS PRE  T I   G+    AVD+SPL R++ A+  +  GA    +RN  + A+ LA+E+I AA     ++A   K+EI R+A++ R
Sbjct:  100 AYEVVKEAFMIIERRTKQNPIQVLVRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSYAQALAEEIIAAANADPKTFAYSRKEEIERIAQSSR 215          
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS7_THEON (30S ribosomal protein S7P OS=Thermococcus onnurineus (strain NA1) GN=rps7p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.204e-17
Identity = 48/116 (41.38%), Postives = 67/116 (57.76%), Query Frame = 2
Query:    5 AVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            A  +VK A  II     QNPIQV + A+ NS PRE  T I   G+    AVD+SPL R++ A+  +  GA    +RN  + A+ LA+E+I AA     S+A   K+EI R+A++ R
Sbjct:  100 AYEVVKEAFMIIERRTKQNPIQVFIRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSYAQALAEEIIAAANKDPKSFAYSKKEEIERIAQSSR 215          
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS7_HALSA (30S ribosomal protein S7P OS=Halobacterium salinarium GN=rps7p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 49/116 (42.24%), Postives = 69/116 (59.48%), Query Frame = 2
Query:    5 AVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            A++IV+ A +I+     +NPIQV+V AV N+ PRE   R+   G+   QAVD +P  RV+QA+  L  GA  ++F+     AE LA++L  AA  +  +YAI  K E  RVA A R
Sbjct:   95 ALKIVRDAFDIVHERTDENPIQVLVSAVENAAPREETVRLKYGGISVPQAVDTAPQRRVDQALKFLADGAHSASFKTPTDAAEALANQLAGAADYNVQTYAIGQKKEKERVAAAAR 210          
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS7_METLZ (30S ribosomal protein S7P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps7p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.021e-16
Identity = 44/117 (37.61%), Postives = 69/117 (58.97%), Query Frame = 2
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            M  ++V  A ++I     QNP+QV+VDAV N+GPRE   R+   G+   ++VD +P+ RVN A+  +     + + +  K     LADELI AAKG    +++  K+E+ R+AK+ R
Sbjct:   78 MCTKMVMDAFDVINKKTKQNPLQVLVDAVANAGPREETVRLKYGGINVPKSVDSAPIRRVNTALRYIALATWKGSHKTKKPAYLVLADELIMAAKGDAKCFSVGKKEEVERIAKSAR 194          
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS7_METB6 (30S ribosomal protein S7P OS=Methanoregula boonei (strain 6A8) GN=rps7p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.021e-16
Identity = 45/117 (38.46%), Postives = 73/117 (62.39%), Query Frame = 2
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            +A+ IV+ A E+I     +NPI+V+V+A+ N+GPRE   R+   G+   ++VD +PL RV+ AI  +     +S+ ++ K  +  LADELI A+KG    Y++  K+E  R+AK+ R
Sbjct:   88 LAIGIVRDAFELINKKTKRNPIEVLVEAIGNTGPREETVRLKYGGINVPKSVDTAPLRRVDSAIGFIAEAVWKSSRKSKKPASAILADELIAASKGDAKCYSVGKKEEKERIAKSAR 204          
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS7_PYRFU (30S ribosomal protein S7P OS=Pyrococcus furiosus GN=rps7p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.252e-16
Identity = 48/116 (41.38%), Postives = 68/116 (58.62%), Query Frame = 2
Query:    5 AVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            A  +VK A +II     +NPIQV+V A+ N+ PRE  T +   G+    AVDISP+ R++ A+  +  GA    +RN  + AE LA+E+I AA     SYA   K EI R+A++ R
Sbjct:  100 AYEVVKEAFKIIEQRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRNKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215          
The following BLAST results are available for this feature:
BLAST of GO241413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_KORCO1.250e-1747.8630S ribosomal protein S7P OS=Korarchaeum cryptofil... [more]
RS7_THEGJ1.633e-1742.2430S ribosomal protein S7P OS=Thermococcus gammatol... [more]
RS7_PYRKO2.785e-1742.2430S ribosomal protein S7P OS=Pyrococcus kodakaraen... [more]
RS7_HALMA2.785e-1741.8830S ribosomal protein S7P OS=Haloarcula marismortu... [more]
RS7_THECE3.637e-1741.3830S ribosomal protein S7P OS=Thermococcus celer GN... [more]
RS7_THEON6.204e-1741.3830S ribosomal protein S7P OS=Thermococcus onnurine... [more]
RS7_HALSA1.805e-1642.2430S ribosomal protein S7P OS=Halobacterium salinar... [more]
RS7_METLZ4.021e-1637.6130S ribosomal protein S7P OS=Methanocorpusculum la... [more]
RS7_METB64.021e-1638.4630S ribosomal protein S7P OS=Methanoregula boonei ... [more]
RS7_PYRFU5.252e-1641.3830S ribosomal protein S7P OS=Pyrococcus furiosus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank description61 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 145 5, mRNA sequence.