GO241397 | Citrus Genome Database

Overview


Name	GO241397
Unique Name	GO241397
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1

Libraries


Library Name	Type
Cara cara navel orange fruit cDNA library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9540	contig	Csv1_Contig9540:532..1036.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.138e-38
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 3

Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            V DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGPL NLAD LADPVNNNAWA+A NFVPGK
Sbjct:  184 VVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

HSP 2 Score: 66.6254 bits (161), Expect = 7.354e-11
Identity = 34/57 (59.65%), Postives = 37/57 (64.91%), Query Frame = 2

Query:   11 SLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            SL+HAQS LA WACQVVLMG VEGY IAGGPLGE   P+ P      +G    P  F
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 206

[Close]

BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.138e-38
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 3

Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            V DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGPL NLAD LADPVNNNAWA+A NFVPGK
Sbjct:  184 VVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

HSP 2 Score: 73.9442 bits (180), Expect = 4.607e-13
Identity = 37/60 (61.67%), Postives = 40/60 (66.67%), Query Frame = 2

Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSL+HAQS LA WACQVVLMG VEGY IAGGPLGE   P+ P      +G    P  F
Sbjct:  147 GNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 206

[Close]

BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.138e-38
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 3

Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            V DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGPL NLAD LADPVNNNAWA+A NFVPGK
Sbjct:  184 VVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

HSP 2 Score: 66.6254 bits (161), Expect = 7.354e-11
Identity = 34/57 (59.65%), Postives = 37/57 (64.91%), Query Frame = 2

Query:   11 SLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            SL+HAQS LA WACQVVLMG VEGY IAGGPLGE   P+ P      +G    P  F
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 206

[Close]

BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.138e-38
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 3

Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            V DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIV GKGPL NLAD L+DPVNNNAW+YA NFVPGK
Sbjct:  187 VVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268

HSP 2 Score: 69.707 bits (169), Expect = 8.688e-12
Identity = 35/60 (58.33%), Postives = 39/60 (65.00%), Query Frame = 2

Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSL+HAQS LA WA QV+LMG VEGY IAGGPLGE   P+ P      +G    P  F
Sbjct:  150 GNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 209

[Close]

BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.138e-38
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 3

Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            V DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGPL NLAD LADPVNNNAW+YA NFVPGK
Sbjct:  186 VIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 73.559 bits (179), Expect = 6.016e-13
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 2

Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSL+HAQS LA WACQVVLMG VEGY +AGGPLGE   P+ P      +G    P  F
Sbjct:  149 GNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAF 208

[Close]

BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 5.404e-38
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 3

Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            V DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQA+V GKGPL NLAD LADPVNNNAW+YA NFVPGK
Sbjct:  185 VVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266

HSP 2 Score: 70.4774 bits (171), Expect = 5.093e-12
Identity = 35/60 (58.33%), Postives = 39/60 (65.00%), Query Frame = 2

Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSL+HAQS LA WACQVVLMG VEGY +AG PLGE   P+ P      +G    P  F
Sbjct:  148 GNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAF 207

[Close]

BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 5.404e-38
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 3

Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            V DPLYPGGSFDPLGLADDPEAFAEL+VKEIKNGRLAMFSMFGFFVQAIV GKGPL NLAD LADPVNNNAWA+A NFVPGK
Sbjct:  185 VIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

HSP 2 Score: 73.559 bits (179), Expect = 6.016e-13
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 2

Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSL+HAQS LA WACQVVLMG VEGY +AGGPLGE   P+ P      +G    P  F
Sbjct:  148 GNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAF 207

[Close]

BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 5.404e-38
Identity = 74/81 (91.36%), Postives = 76/81 (93.83%), Query Frame = 3

Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPG 356
            V DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIV GKGPL NLAD +ADPVNNNAWAYA NFVPG
Sbjct:  181 VVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261

HSP 2 Score: 74.3294 bits (181), Expect = 3.527e-13
Identity = 38/60 (63.33%), Postives = 40/60 (66.67%), Query Frame = 2

Query:    2 GNPSLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            GNPSLIHAQS LA WACQVVLMG VEGY IAGGPLGE   P+ P      +G    P  F
Sbjct:  144 GNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 203

[Close]

BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 7.058e-38
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 3

Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            V DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGPL NLAD +ADPVNNNAWA+A NFVPGK
Sbjct:  186 VVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 66.6254 bits (161), Expect = 7.354e-11
Identity = 34/57 (59.65%), Postives = 37/57 (64.91%), Query Frame = 2

Query:   11 SLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            SL+HAQS LA WACQVVLMG VEGY IAGGPLGE   P+ P      +G    P  F
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 208

[Close]

BLAST of GO241397 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 7.058e-38
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 3

Query:  114 VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVXGKGPLXNLADXLADPVNNNAWAYAXNFVPGK 359
            V DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV GKGPL NLAD +ADPVNNNAWA+A NFVPGK
Sbjct:  186 VVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 66.6254 bits (161), Expect = 7.354e-11
Identity = 34/57 (59.65%), Postives = 37/57 (64.91%), Query Frame = 2

Query:   11 SLIHAQSXLAXWACQVVLMGXVEGYXIAGGPLGEXD*PIVPRWQL*SIGFG**PGGF 181
            SL+HAQS LA WACQVVLMG VEGY IAGGPLGE   P+ P      +G    P  F
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 208

The following BLAST results are available for this feature:

BLAST of GO241397 vs. ExPASy Swiss-Prot

BLAST of GO241397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73


Match Name	E-value	Identity	Description
CB2C_SOLLC	4.138e-38	91.46	Chlorophyll a-b binding protein 1C, chloroplastic ...	[more]
CB2B_SOLLC	4.138e-38	91.46	Chlorophyll a-b binding protein 1B, chloroplastic ...	[more]
CB2A_SOLLC	4.138e-38	91.46	Chlorophyll a-b binding protein 1A, chloroplastic ...	[more]
CB28_PEA	4.138e-38	90.24	Chlorophyll a-b binding protein 8, chloroplastic O...	[more]
CB23_PETSP	4.138e-38	91.46	Chlorophyll a-b binding protein 22R, chloroplastic...	[more]
CB25_NICPL	5.404e-38	90.24	Chlorophyll a-b binding protein E, chloroplastic O...	[more]
CB21_PETSP	5.404e-38	91.46	Chlorophyll a-b binding protein 13, chloroplastic ...	[more]
CB21_MAIZE	5.404e-38	91.36	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB2F_SOLLC	7.058e-38	90.24	Chlorophyll a-b binding protein 3B, chloroplastic ...	[more]
CB2E_SOLLC	7.058e-38	90.24	Chlorophyll a-b binding protein 3A, chloroplastic ...	[more]

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Properties


Property Name	Value
Genbank description	45 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 127 5, mRNA sequence.